Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 2357.4 1273 100.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1434.9 1365 57.6
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1399.4 1366 56.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1382.1 1368 56.1
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1382.1 1368 55.4
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1305.8 1359 53.6
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1288.9 1402 52.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1285.4 1369 53.2
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1282.7 1392 52.6
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1282.3 1366 52.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1276.2 1376 52.7
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1275.0 1371 53.3
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1275.0 1366 51.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1271.1 1367 52.2
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1270.4 1371 53.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1262.3 1367 51.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1258.8 1363 51.1
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1258.0 1383 51.9
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1252.7 1370 51.9
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1250.3 1366 51.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1248.0 1370 51.5
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1245.7 1336 51.6
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1242.3 1369 50.6
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1233.0 1364 50.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1232.6 1372 51.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1220.3 1339 50.8
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1219.1 1339 50.6
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1211.1 1364 50.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1208.7 1368 51.5
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1206.0 1368 49.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1205.3 1367 49.9
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1201.4 1369 51.8
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1199.9 1329 50.8
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1189.5 1370 49.7
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1186.0 1339 49.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1184.5 1365 50.5
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1182.9 1367 49.7
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1182.2 1367 49.7
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1182.2 1367 49.7
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1181.0 1376 48.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1180.2 1373 48.7
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1176.4 1375 49.2
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1175.2 1367 48.7
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1170.6 1398 48.2
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1168.7 1375 49.5
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1167.9 1371 48.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1162.1 1375 49.1
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1161.4 1376 48.4
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1161.0 1368 48.2
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1152.9 1364 48.4
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1151.3 1304 52.1
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1151.0 1279 50.7
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1149.8 1385 47.7
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1141.7 1367 47.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1140.2 1365 48.0
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1126.7 1403 48.9
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1124.0 1369 49.5
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1120.9 1372 48.9
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1116.3 1375 47.6
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1107.4 1415 46.0
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1107.0 1380 47.2
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1103.2 1376 48.0
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1101.3 1184 51.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1100.9 1342 47.8
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1100.5 1301 48.3
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1097.0 1344 47.8
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1095.5 1340 47.4
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1092.4 1343 47.6
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1091.6 1339 49.4
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1090.1 1349 47.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1086.6 1340 47.3
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1085.5 1186 52.0
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1082.0 1334 47.5
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1081.2 1055 56.7
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1080.1 1340 46.9
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1079.3 1341 47.2
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1077.4 1341 47.1
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.7e-311 1072.8 1186 51.7
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 6.1e-311 1071.2 1342 47.1
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 1.0e-310 1070.5 1050 54.8
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 8.6e-310 1067.4 1262 48.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.5e-309 1065.8 1373 47.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.8e-307 1059.7 1377 45.8
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 3.1e-307 1058.9 1342 46.7
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 3.4e-306 1055.4 1406 47.3
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.7e-305 1052.0 1300 46.5
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.1e-300 1034.2 1385 44.7
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 7.6e-298 1027.7 1346 45.0
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 5.1e-294 1015.0 1375 45.2
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 1.7e-289 1000.0 1199 48.2
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 7.1e-288 994.6 1302 45.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 3.6e-284 982.2 994 53.7
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 3.2e-280 969.1 1072 50.6
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 6.0e-279 964.9 1083 50.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 7.3e-277 958.0 1288 43.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 3.8e-273 945.7 1057 51.4
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 4.9e-273 945.3 1390 42.9
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.5e-253 880.6 968 49.6
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.5e-250 870.5 1359 40.0
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.5e-250 870.5 1210 42.9
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.0e-241 841.3 775 57.8
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 7.9e-239 831.6 1329 44.5
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 5.7e-237 825.5 1369 41.9
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 3.1e-235 819.7 1036 45.5
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.5e-234 816.2 964 49.4
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.3e-227 792.3 969 47.2
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.8e-203 714.1 694 58.4
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.9e-195 687.6 799 49.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.1e-192 678.3 851 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.9e-185 653.3 1443 34.0
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 8.1e-175 619.0 1122 37.7
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.9e-174 615.5 687 49.3
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.7e-169 601.3 1479 32.1
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.1e-169 599.7 1156 36.2
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 6.2e-167 592.8 1025 39.6
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.5e-154 550.4 1098 37.0
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 2.5e-144 517.7 635 47.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 8.5e-116 422.9 1462 29.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.4e-115 419.5 500 48.8
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-104 385.6 454 49.3
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.4e-88 330.9 329 55.9
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 6.4e-87 327.0 406 47.3
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.4e-81 309.3 408 46.8
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.7e-71 274.6 411 42.6
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.9e-60 238.0 383 40.5
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 8.7e-52 210.3 1180 22.9
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.3e-51 208.0 299 44.1
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.6e-50 204.9 340 39.4
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 4.0e-49 201.4 235 49.8
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 9.9e-48 196.8 527 31.9
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 8.7e-44 183.7 440 30.9
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-40 173.3 160 52.5
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.1e-38 166.8 114 75.4
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 4.8e-34 151.4 207 44.0
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 8.2e-34 150.6 114 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.0e-28 132.1 240 36.7
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 3.3e-27 128.6 82 74.4
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 5.0e-23 114.8 106 56.6
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.2e-15 89.4 87 51.7
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.8e-15 88.6 189 33.9
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 6.1e-13 81.3 170 33.5
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.7e-10 72.0 84 46.4
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.7e-10 72.0 84 46.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.3e-10 71.2 64 54.7
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 3.8e-07 62.0 133 30.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 8.5e-07 60.8 130 30.8
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.1e-06 60.5 153 28.8
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.4e-06 60.1 159 30.2
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.5e-06 59.3 46 63.0
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 4.2e-06 58.5 130 30.0
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 4.2e-06 58.5 159 29.6
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 4.2e-06 58.5 130 29.2
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 5.5e-06 58.2 159 28.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 5.5e-06 58.2 129 28.7
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 7.2e-06 57.8 130 29.2
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 7.2e-06 57.8 130 29.2
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 9.4e-06 57.4 130 29.2
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 9.4e-06 57.4 130 30.0


User provided reference genes

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