Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 0.0e+00 1914.4 960 100.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 6.6e-137 492.7 1074 36.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.6e-133 480.7 1075 35.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.1e-118 430.6 740 38.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.8e-111 406.8 1044 32.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.9e-110 402.9 1156 30.9
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.4e-109 400.6 1048 32.6
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.2e-108 397.9 792 36.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.9e-107 394.8 1079 32.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 7.1e-107 392.9 805 35.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 8.7e-105 386.0 1051 31.3
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.1e-102 377.5 886 33.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.4e-99 368.6 817 34.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 7.1e-99 366.3 1072 31.0
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 9.3e-99 365.9 807 35.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.6e-98 365.2 1047 31.9
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 6.0e-98 363.2 707 37.3
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.0e-97 362.5 1080 30.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 3.0e-97 360.9 588 39.8
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.9e-97 360.5 1023 30.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 3.9e-97 360.5 777 35.4
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.9e-97 360.5 781 34.3
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.1e-96 359.0 802 35.2
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.3e-96 357.5 847 34.1
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.1e-95 354.8 753 35.5
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.1e-94 352.4 789 35.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-94 351.7 1035 31.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.4e-93 347.4 1079 30.4
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.8e-92 344.0 1054 30.7
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.2e-91 340.9 1075 29.8
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.3e-91 339.3 1065 30.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 9.3e-91 339.3 1055 31.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.1e-90 338.2 1098 30.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.9e-88 331.6 1051 30.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.3e-87 328.9 814 33.4
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.4e-86 325.5 1083 29.5
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.1e-86 324.3 1087 29.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.2e-85 322.4 995 29.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.6e-85 321.2 1081 29.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.6e-85 321.2 861 31.8
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.7e-84 318.5 750 33.9
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 8.5e-84 316.2 1115 28.7
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.5e-83 314.7 1060 29.2
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.6e-82 312.0 1036 30.4
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.3e-79 302.4 783 31.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.7e-79 300.8 729 33.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.7e-79 300.8 1067 27.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.4e-78 298.1 1026 29.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 9.1e-78 296.2 732 32.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.5e-77 295.4 740 32.4
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.5e-77 295.4 762 30.8
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.3e-76 292.4 791 32.4
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.3e-76 292.4 735 32.2
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.8e-76 290.8 792 33.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.8e-76 290.8 842 31.4
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.5e-75 288.1 774 32.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 7.2e-75 286.6 1005 29.6
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.7e-73 280.0 821 30.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.1e-72 279.3 1004 29.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 4.4e-72 277.3 776 32.6
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.2e-71 275.0 887 29.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.2e-71 275.0 735 33.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.8e-71 273.9 771 31.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 8.2e-71 273.1 906 28.9
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-70 271.9 874 30.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 4.1e-70 270.8 747 30.4
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.6e-69 268.1 736 33.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 3.5e-69 267.7 744 30.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.7e-68 265.4 758 30.7
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 9.4e-67 259.6 1092 28.2
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 3.6e-66 257.7 1030 29.2
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.7e-66 257.3 750 31.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.2e-63 248.4 835 28.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.2e-63 248.4 1075 27.1
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-62 246.1 655 33.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.8e-62 245.4 839 28.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 7.0e-62 243.4 720 32.1
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.6e-61 242.3 800 28.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.5e-60 236.9 766 30.5
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 8.5e-60 236.5 745 30.9
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.0e-57 228.0 921 28.6
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 5.2e-57 227.3 775 31.1
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 5.2e-57 227.3 775 31.1
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 6.8e-57 226.9 775 31.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.7e-56 223.8 990 27.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 4.1e-54 217.6 732 30.5
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 9.1e-54 216.5 729 28.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.2e-53 216.1 801 29.0
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.7e-53 214.9 709 28.2
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.9e-52 211.5 770 29.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-50 205.7 711 29.4
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.0e-49 203.0 447 36.2
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.3e-47 196.1 818 24.4
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.2e-43 181.0 555 30.6
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.3e-41 175.3 727 26.7
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.5e-40 172.6 250 42.8
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 2.8e-34 151.8 335 34.9
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.2e-33 147.5 423 31.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 5.2e-33 147.5 639 28.8
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 8.9e-33 146.7 130 53.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.9e-33 146.7 502 30.1
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-32 146.4 174 46.6
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.6e-32 145.2 184 44.6
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.4e-30 138.7 154 48.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.4e-30 138.7 958 24.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 9.2e-30 136.7 129 53.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-29 135.2 127 52.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.0e-28 133.3 126 51.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-28 132.9 208 43.3
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.7e-28 132.5 197 42.1
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 7.3e-27 127.1 130 51.5
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.3e-27 127.1 172 45.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-25 123.2 743 24.0
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.3e-25 122.1 1001 24.5
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 5.2e-25 120.9 126 50.8
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 6.8e-25 120.6 433 30.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 5.8e-24 117.5 337 29.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.9e-23 115.2 113 53.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.9e-23 115.2 129 50.4
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 4.1e-22 111.3 216 38.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.2e-21 109.8 299 28.1
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.6e-21 109.4 707 22.8
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.1e-21 109.0 332 27.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 6.6e-20 104.0 432 26.9
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.8e-18 98.6 305 24.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.8e-17 95.9 129 41.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.2e-14 85.1 328 28.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.1e-13 82.4 585 24.1
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.1e-13 82.4 444 27.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.7e-13 82.0 157 33.8
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.0e-12 78.6 94 44.7
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.9e-11 75.9 59 61.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-09 70.1 67 52.2
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.4e-06 58.9 460 24.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 9.3e-06 57.0 423 24.1


User provided reference genes

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