Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 6.5e-258 893.6 484 100.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 9.0e-175 617.5 485 72.2
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.8e-167 593.2 486 69.8
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.9e-167 591.3 485 69.9
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.2e-166 590.5 485 70.1
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.4e-166 589.0 486 69.1
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 4.2e-164 582.0 492 64.0
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 9.3e-164 580.9 485 68.2
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.6e-163 580.1 485 67.6
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 2.3e-162 576.2 488 62.7
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 3.9e-162 575.5 484 67.8
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 6.7e-162 574.7 489 63.8
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.5e-161 573.5 488 68.4
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 3.3e-161 572.4 486 67.7
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 3.3e-161 572.4 486 67.3
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 5.6e-161 571.6 485 67.6
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 7.4e-161 571.2 499 65.1
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 7.4e-161 571.2 486 61.3
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 7.4e-161 571.2 496 67.7
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 8.1e-160 567.8 485 62.5
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.1e-159 567.4 485 66.6
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 1.1e-159 567.4 488 69.1
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.4e-159 566.2 528 58.3
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 2.4e-159 566.2 484 67.1
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 3.1e-159 565.8 416 76.0
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 5.3e-159 565.1 489 60.9
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.2e-158 563.9 493 60.4
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 2.0e-158 563.1 484 60.5
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 3.4e-158 562.4 493 63.1
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 7.6e-158 561.2 486 60.3
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 7.6e-158 561.2 533 58.2
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.7e-157 560.1 485 66.6
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 1.7e-157 560.1 488 67.0
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 3.8e-157 558.9 488 59.6
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.4e-157 558.1 486 60.1
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.1e-156 557.4 484 66.7
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.4e-156 556.2 500 58.0
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.2e-156 555.8 561 54.5
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 4.2e-156 555.4 488 65.0
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 5.5e-156 555.1 484 66.9
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 9.3e-156 554.3 484 58.3
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.2e-155 553.9 490 65.3
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.6e-155 553.5 485 67.2
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.3e-154 550.4 484 66.3
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 3.0e-154 549.3 484 58.7
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.1e-153 547.4 488 66.2
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 1.5e-153 547.0 484 59.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 2.5e-153 546.2 485 65.2
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 7.4e-153 544.7 489 59.3
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 7.4e-153 544.7 489 59.3
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 2.1e-152 543.1 450 61.8
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 3.7e-152 542.3 490 65.5
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 6.2e-152 541.6 489 57.3
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 8.2e-152 541.2 496 58.7
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 8.2e-152 541.2 486 59.3
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-150 537.3 505 63.2
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 1.5e-150 537.0 485 64.7
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 7.6e-150 534.6 494 64.6
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 4.9e-149 531.9 485 64.9
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 8.4e-149 531.2 489 63.4
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.4e-148 530.4 461 60.3
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 7.9e-147 524.6 487 57.9
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.1e-145 520.8 484 64.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 3.3e-145 519.2 427 60.4
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 7.4e-145 518.1 495 61.2
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 4.8e-144 515.4 431 60.8
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 9.0e-143 511.1 500 63.2
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 9.0e-143 511.1 391 62.7
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 2.0e-142 510.0 493 61.7
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.7e-141 506.9 383 65.5
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 8.5e-141 504.6 444 59.9
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.1e-140 504.2 489 55.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 6.1e-139 498.4 489 62.0
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 3.3e-137 492.7 384 63.0
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 2.8e-136 489.6 384 63.5
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.2e-134 484.2 542 50.4
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 2.6e-134 483.0 546 52.2
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.3e-133 480.7 378 63.5
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.1e-132 477.6 408 69.6
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.9e-132 476.9 386 61.1
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 1.6e-131 473.8 508 52.6
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.4e-130 470.7 407 60.4
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 8.8e-130 468.0 384 61.2
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 8.8e-130 468.0 505 52.5
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 4.4e-129 465.7 489 53.2
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 7.4e-129 464.9 329 79.3
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 3.7e-128 462.6 382 58.4
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 2.4e-127 459.9 484 52.9
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 5.9e-126 455.3 486 59.3
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.0e-125 454.5 494 52.0
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 4.2e-124 449.1 512 49.4
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 5.5e-124 448.7 483 57.1
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 9.4e-124 448.0 560 52.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.6e-123 447.2 384 57.8
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.4e-122 444.1 483 56.7
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 4.8e-120 435.6 486 50.0
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.1e-119 433.0 484 49.4
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.9e-116 423.7 493 54.2
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.3e-114 416.8 378 57.7
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.3e-112 408.7 407 62.4
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.0e-110 403.7 485 53.6
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.5e-110 402.9 560 49.8
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.4e-106 391.0 441 49.7
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.5e-105 387.5 560 48.0
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.8e-98 364.0 411 50.6
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 8.9e-98 361.7 428 49.1
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 9.8e-97 358.2 282 60.3
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.7e-93 347.4 427 45.2
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 6.6e-93 345.5 411 53.3
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.5e-76 291.2 401 41.4
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.1e-71 275.0 250 66.4
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 4.0e-66 256.5 298 48.7
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 3.2e-63 246.9 247 51.4
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.2e-63 246.5 237 59.1
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.0e-62 242.7 399 44.1
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.0e-62 242.7 399 44.1
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 2.5e-60 237.3 454 34.6
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 3.3e-52 210.3 239 51.0
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 8.1e-51 205.7 237 50.2
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-42 178.3 112 70.5
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 3.1e-42 177.2 256 47.7
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-41 175.3 240 42.9
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 1.5e-41 174.9 516 27.7
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 2.6e-41 174.1 210 49.0
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 7.9e-38 162.5 146 60.3
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 1.0e-37 162.2 220 47.3
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 3.3e-36 157.1 153 57.5
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.8e-32 143.7 90 76.7
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 6.5e-32 142.9 75 85.3
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.2e-31 140.2 81 77.8
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 6.3e-27 126.3 113 61.1
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 6.9e-26 122.9 67 82.1
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.7e-24 118.2 331 30.2
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 5.0e-24 116.7 111 54.1
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 2.5e-20 104.4 497 23.3
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.8e-18 98.2 507 23.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 5.3e-18 96.7 84 54.8
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 6.5e-16 89.7 250 30.0
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.4e-13 82.0 390 22.8
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 6.7e-13 79.7 39 82.1
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 2.4e-10 71.2 384 22.9
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 3.1e-10 70.9 55 60.0
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 1.5e-09 68.6 53 60.4
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 2.0e-09 68.2 259 25.1
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 2.0e-09 68.2 258 24.8
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 3.5e-09 67.4 69 44.9
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.5e-09 67.0 429 22.4
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.5e-09 67.0 429 22.4
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 1.0e-08 65.9 513 22.2
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.7e-08 65.1 384 25.0
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 2.9e-08 64.3 401 21.4
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 2.9e-08 64.3 379 24.3
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 8.5e-08 62.8 513 22.2
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 2.5e-07 61.2 51 54.9
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 5.5e-07 60.1 351 23.1
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 5.5e-07 60.1 543 21.4
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 5.5e-07 60.1 376 22.6
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 5.5e-07 60.1 466 21.0
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 3.6e-06 57.4 337 22.6


User provided reference genes

Program Settings