Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 0.0e+00 1346.3 653 100.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1125.9 654 82.3
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 0.0e+00 1102.0 654 80.0
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1099.3 653 79.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1092.4 654 79.8
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 0.0e+00 1090.5 656 79.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1085.5 650 79.5
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 0.0e+00 1084.3 659 78.6
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 0.0e+00 1080.1 657 78.8
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 0.0e+00 1078.2 657 78.8
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 0.0e+00 1077.8 655 78.2
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 8.9e-312 1073.2 659 78.3
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 8.9e-312 1073.2 656 79.4
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.8e-311 1072.0 653 79.6
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 5.4e-311 1070.5 654 78.3
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 655 77.7
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 655 77.7
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 9.8e-310 1066.2 656 78.8
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 9.8e-310 1066.2 655 78.6
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.7e-309 1064.3 654 78.1
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.4e-308 1062.4 654 78.6
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.4e-308 1061.6 654 77.2
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 3.2e-308 1061.2 655 78.5
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 4.1e-308 1060.8 660 78.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.2e-307 1059.3 654 78.3
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 6.0e-307 1057.0 657 78.1
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.0e-307 1057.0 654 77.5
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.0e-307 1057.0 655 77.9
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.0e-306 1056.2 655 78.0
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.3e-306 1055.0 654 77.4
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.3e-306 1055.0 655 77.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.0e-306 1054.7 668 77.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 3.9e-306 1054.3 657 77.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 656 77.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 8.6e-306 1053.1 654 77.2
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 9.5e-305 1049.7 673 74.9
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.6e-304 1048.9 655 76.2
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 3.6e-304 1047.7 655 77.6
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 4.7e-304 1047.3 657 77.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.2e-304 1047.0 655 77.1
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-303 1045.8 655 77.7
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.2e-303 1043.9 654 77.5
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 6.8e-303 1043.5 654 77.7
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 653 76.0
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 2.6e-302 1041.6 707 73.1
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 2.6e-302 1041.6 654 77.1
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 9.9e-302 1039.6 710 72.1
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 3.7e-301 1037.7 654 75.8
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 8.3e-301 1036.6 649 76.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-299 1032.7 654 74.9
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 6.0e-299 1030.4 655 75.7
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 3.9e-298 1027.7 656 75.9
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 8.6e-298 1026.5 655 76.0
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 702 70.8
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 5.6e-297 1023.8 654 75.7
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.7e-293 1012.3 636 78.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 3.8e-293 1011.1 656 74.5
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 3.2e-292 1008.1 662 73.9
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.1e-292 1007.7 679 72.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.2e-292 1006.5 655 74.4
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.3e-290 1001.9 654 74.2
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 8.7e-290 1000.0 655 73.1
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.9e-289 998.8 655 73.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.9e-289 998.8 682 72.6
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.3e-289 998.0 655 73.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 7.3e-289 996.9 655 73.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 7.3e-289 996.9 655 73.9
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.3e-289 996.9 684 71.3
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 9.6e-289 996.5 655 73.3
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.7e-288 994.2 666 73.6
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 6.2e-288 993.8 655 73.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.1e-288 993.4 655 72.8
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.1e-288 993.4 655 72.8
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.1e-287 993.0 655 73.6
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.1e-287 993.0 608 78.1
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 3.1e-287 991.5 655 73.3
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 9.0e-287 989.9 656 73.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 9.0e-287 989.9 655 73.3
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 2.6e-286 988.4 655 73.0
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.7e-285 985.7 681 70.3
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.9e-285 984.9 655 72.5
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 2.1e-283 978.8 655 71.9
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.1e-283 978.8 659 71.3
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.6e-283 977.6 655 71.9
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 7.8e-283 976.9 655 73.3
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.3e-282 975.3 666 70.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 6.6e-282 973.8 661 70.8
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 3.4e-278 961.4 682 69.8
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.3e-277 959.5 654 71.9
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.4e-276 956.1 600 78.8
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.6e-275 952.6 634 74.0
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 2.1e-275 952.2 661 69.1
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.5e-273 946.0 697 66.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.9e-273 945.7 661 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 4.5e-270 934.5 668 68.0
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.2e-269 932.2 596 76.7
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.9e-268 929.1 655 70.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.0e-266 923.3 686 66.9
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 2.3e-266 922.2 672 67.1
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.8e-264 915.2 659 68.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.4e-263 912.9 682 68.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.4e-263 912.1 669 68.9
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.9e-260 902.5 655 66.7
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-260 902.1 670 65.8
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 3.2e-260 901.7 550 78.2
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 9.7e-257 890.2 682 65.8
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 5.3e-255 884.4 665 64.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.9e-255 884.0 670 65.2
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.5e-252 875.5 614 72.1
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 2.7e-251 872.1 569 73.8
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 3.0e-250 868.6 569 73.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.1e-247 858.6 867 54.7
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.9e-244 849.4 671 62.7
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.3e-240 836.6 533 74.5
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 9.1e-239 830.5 503 78.5
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.9e-237 825.5 475 82.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.6e-230 803.1 655 61.2
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.4e-223 780.0 527 74.8
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 5.9e-222 774.6 670 59.6
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 2.1e-219 766.1 638 59.2
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 7.8e-198 694.5 663 54.4
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 2.3e-181 639.8 710 47.6
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.2e-177 627.5 665 49.6
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.2e-175 619.0 661 51.6
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 5.4e-175 618.6 639 50.5
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.6e-174 617.1 654 51.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.7e-171 605.5 526 61.0
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-170 604.0 389 74.8
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.2e-167 592.4 512 59.0
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 9.3e-167 591.3 337 83.1
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.6e-153 546.6 674 46.7
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.2e-151 539.7 368 72.3
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 4.2e-151 539.3 337 77.7
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.7e-144 517.3 320 76.6
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.1e-138 496.5 656 45.4
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.1e-138 496.1 276 84.1
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-125 454.1 650 42.2
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 7.4e-124 448.7 345 66.7
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 9.4e-111 405.2 387 58.1
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.2e-110 404.8 264 74.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 4.0e-109 399.8 309 67.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.2e-107 394.0 655 38.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 6.1e-94 349.4 236 70.8
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 7.8e-81 305.8 434 41.0
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 3.1e-77 293.9 565 36.3
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 3.4e-76 290.4 558 35.5
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 2.4e-74 284.3 660 30.8
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.2e-70 271.9 231 56.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.6e-70 270.4 308 50.0
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.7e-65 254.2 232 58.2
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.0e-65 253.1 565 35.4
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.3e-64 251.1 201 60.2
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.8e-54 216.9 276 44.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 4.8e-46 190.3 139 72.7
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.3e-39 167.2 145 64.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 3.1e-37 161.0 228 43.4
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.3e-32 145.6 108 66.7
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 3.7e-30 137.5 125 56.0
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.5e-28 132.1 113 58.4
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 6.1e-25 120.2 80 70.0
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 3.9e-24 117.5 64 85.9
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 1.5e-23 115.5 61 73.8
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-21 109.4 116 50.0
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 1.8e-21 108.6 59 69.5
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 1.0e-19 102.8 69 65.2
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 6.5e-19 100.1 148 39.2
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.5e-18 98.2 88 59.1
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.4e-16 92.4 65 69.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-15 87.8 50 86.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 7.4e-15 86.7 79 55.7
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 8.2e-14 83.2 50 78.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 3.4e-12 77.8 50 72.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 5.9e-12 77.0 45 86.7
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.1e-10 72.8 47 70.2
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.2e-09 69.3 47 72.3
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.6e-09 68.9 74 54.1
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.7e-09 68.2 39 79.5
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 4.7e-09 67.4 49 57.1
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.8e-08 65.5 43 67.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 5.1e-08 63.9 42 69.0
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.3e-07 61.2 37 73.0
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 2.2e-06 58.5 254 26.8
Glyma.09G285500 Glycine max HOM05D000639 ORTHO05D006731 6.3e-06 57.0 236 23.7
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 6.3e-06 57.0 257 27.2
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 8.2e-06 56.6 162 29.0


User provided reference genes

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