Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 9.7e-247 856.3 411 100.0
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.6e-177 626.3 388 73.2
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 9.9e-175 617.1 414 69.3
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.2e-173 611.7 407 69.5
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.2e-172 610.1 407 70.3
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-169 599.0 408 66.7
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.0e-167 592.8 406 68.2
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 7.6e-167 590.9 406 66.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.4e-165 586.6 408 65.4
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 7.1e-165 584.3 407 65.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.1e-165 584.3 408 66.7
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.6e-164 581.6 400 66.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.6e-164 581.6 406 65.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.6e-164 581.6 406 65.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.6e-164 581.6 402 66.2
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.0e-164 581.3 407 65.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.8e-163 579.7 409 64.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.0e-163 578.9 414 64.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 5.1e-163 578.2 407 65.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.7e-163 577.8 389 69.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 3.3e-162 575.5 402 65.4
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.1e-161 572.8 408 65.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.1e-161 572.8 399 66.7
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.8e-161 571.6 405 64.2
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.1e-160 570.5 403 63.8
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.4e-160 570.1 409 63.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-160 570.1 401 65.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.8e-160 569.7 410 64.1
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.1e-160 568.9 410 62.7
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.0e-160 568.5 405 63.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.0e-160 568.5 398 64.3
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.0e-160 567.4 406 63.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 9.0e-160 567.4 404 64.6
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-159 567.0 399 64.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.4e-159 565.5 409 63.3
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 7.6e-159 564.3 402 64.9
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-158 563.5 408 62.7
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.7e-158 563.1 402 64.7
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.9e-158 562.4 401 63.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.2e-157 558.9 398 62.6
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 5.5e-157 558.1 408 63.7
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.7e-156 555.8 407 61.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 7.9e-156 554.3 406 62.1
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.0e-155 553.9 401 62.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.0e-155 553.9 402 63.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.8e-155 553.1 401 62.3
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.8e-155 553.1 390 64.4
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.3e-155 552.7 407 62.2
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.3e-155 552.7 401 61.3
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.0e-155 552.4 407 61.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 3.9e-155 552.0 401 62.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.1e-155 551.6 406 60.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 8.7e-155 550.8 401 62.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 8.7e-155 550.8 401 62.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 8.7e-155 550.8 401 62.1
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 8.7e-155 550.8 401 62.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.1e-154 550.4 402 63.7
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.1e-154 550.4 403 61.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.5e-154 550.1 402 61.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.9e-154 549.7 401 61.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.5e-154 549.3 403 61.3
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.3e-154 548.9 402 63.9
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.3e-154 548.9 403 61.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 3.3e-154 548.9 400 63.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.3e-154 548.9 395 64.6
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.3e-154 548.5 402 61.9
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 7.4e-154 547.7 412 62.6
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 7.4e-154 547.7 399 62.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.6e-153 546.6 406 61.1
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.2e-153 546.2 402 61.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.2e-153 546.2 402 61.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.2e-153 546.2 402 61.7
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.8e-153 545.8 405 60.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.8e-153 545.8 402 61.7
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 6.3e-153 544.7 405 63.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.3e-153 544.7 395 64.3
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.3e-152 541.6 402 62.2
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 6.9e-152 541.2 406 60.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.0e-150 537.3 399 59.9
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.8e-150 535.4 398 60.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.8e-150 535.4 404 61.1
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 8.5e-150 534.3 416 59.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.2e-149 531.9 397 60.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 4.2e-149 531.9 417 59.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.2e-149 531.2 397 59.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.2e-148 530.4 401 60.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 3.6e-148 528.9 403 59.1
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.4e-147 526.9 401 59.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.0e-147 525.8 405 58.5
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 5.1e-147 525.0 407 59.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.7e-146 520.8 389 59.6
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 9.7e-146 520.8 406 59.9
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-145 520.4 391 59.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.7e-145 520.0 395 60.0
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-144 516.9 385 61.0
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.3e-144 515.0 389 60.7
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.3e-144 515.0 389 60.7
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 5.3e-144 515.0 391 59.8
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 9.1e-144 514.2 413 58.8
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 5.9e-143 511.5 393 58.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 5.9e-143 511.5 401 59.4
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.4e-141 506.9 400 60.2
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.9e-141 506.5 391 60.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.2e-141 505.8 400 58.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-140 503.4 414 59.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.1e-140 503.1 391 60.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.6e-140 502.3 388 59.3
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.8e-139 500.0 395 58.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 6.7e-139 498.0 391 58.3
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.5e-138 496.9 391 61.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.7e-138 494.2 389 57.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-135 485.7 373 59.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-135 485.7 373 59.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.1e-133 480.7 394 55.3
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.9e-133 479.9 394 56.1
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.2e-132 477.2 404 56.7
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.0e-131 472.6 385 56.4
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.0e-131 472.2 394 54.1
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.7e-126 456.8 412 54.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.2e-119 434.1 417 50.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.8e-118 429.1 401 52.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-118 428.3 407 51.8
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-117 427.6 388 51.5
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.2e-113 413.3 414 49.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.4e-112 409.8 398 51.3
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 9.1e-112 407.9 398 52.5
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.0e-110 402.1 378 53.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 5.7e-106 388.7 417 47.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.1e-104 384.4 392 50.8
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.2e-103 380.9 403 47.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.2e-98 364.4 406 46.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.6e-95 354.0 402 48.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.5e-95 352.8 401 45.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-92 344.4 408 45.8
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.3e-83 313.5 406 42.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 3.1e-83 313.2 256 57.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 6.8e-83 312.0 396 43.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.6e-82 310.1 406 41.6
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-81 307.8 399 42.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.2e-80 303.1 408 40.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.3e-78 297.0 401 42.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.7e-71 273.5 184 69.6
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.0e-62 243.4 228 52.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.1e-59 235.0 432 33.6
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.9e-54 216.5 157 59.2
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.1e-44 184.1 156 57.1
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.2e-40 170.2 113 65.5
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.9e-39 165.6 390 31.0
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-36 157.1 320 31.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-29 134.4 96 64.6
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.0e-25 122.1 83 65.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.3e-20 105.1 408 26.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.0e-09 66.6 229 26.2
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.5e-09 66.2 40 67.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.5e-09 65.9 46 50.0
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-06 58.5 60 41.7
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 4.0e-06 57.0 72 50.0


User provided reference genes

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