Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 0.0e+00 1391.3 742 100.0
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1241.5 750 86.7
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1184.1 761 81.5
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 6.1e-300 1033.9 574 94.6
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 1.5e-282 976.1 776 66.6
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 2.6e-282 975.3 776 66.9
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 1.7e-281 972.6 776 66.6
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 8.3e-281 970.3 764 66.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 9.2e-280 966.8 775 65.9
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 8.6e-278 960.3 777 65.5
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 4.3e-277 958.0 777 66.3
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 1.8e-275 952.6 776 65.5
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 2.4e-275 952.2 773 65.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 5.2e-275 951.0 776 65.2
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 4.4e-274 948.0 758 65.4
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 4.4e-274 948.0 776 65.1
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 4.9e-273 944.5 774 65.8
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 2.4e-272 942.2 773 65.2
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 1.2e-271 939.9 754 65.9
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 3.5e-271 938.3 765 64.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.0e-270 936.8 774 64.0
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.5e-269 932.9 769 64.6
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 1.6e-268 929.5 769 64.6
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 1.1e-267 926.8 776 63.9
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.8e-267 926.0 775 62.8
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 1.8e-267 926.0 756 65.3
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 3.1e-267 925.2 777 64.1
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 6.9e-267 924.1 776 64.2
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 9.0e-267 923.7 774 64.0
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 2.0e-266 922.5 779 62.9
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 5.8e-266 921.0 773 63.3
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 1.9e-264 916.0 756 64.2
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 9.3e-264 913.7 756 64.0
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 1.2e-263 913.3 756 64.0
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 2.1e-263 912.5 791 62.7
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 2.3e-262 909.1 765 62.9
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 3.0e-262 908.7 773 63.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.1e-261 906.7 755 64.1
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.5e-261 906.4 776 63.3
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 1.5e-261 906.4 774 62.8
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 9.6e-261 903.7 756 62.7
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 9.6e-261 903.7 791 61.6
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.1e-260 902.5 760 62.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 1.2e-258 896.7 777 61.4
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 1.2e-258 896.7 778 61.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 2.6e-258 895.6 756 61.9
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 3.4e-258 895.2 771 60.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 3.4e-258 895.2 777 61.3
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 1.9e-256 889.4 771 61.0
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 3.2e-256 888.6 776 61.7
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 9.3e-256 887.1 757 62.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 3.5e-255 885.2 750 64.1
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 8.7e-254 880.6 759 61.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 1.1e-253 880.2 753 64.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 1.5e-253 879.8 775 61.3
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 9.6e-253 877.1 756 61.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 8.1e-252 874.0 778 61.2
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 3.1e-251 872.1 779 59.9
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 1.2e-250 870.2 719 64.3
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 2.0e-250 869.4 778 61.1
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 3.4e-250 868.6 777 61.1
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 1.3e-249 866.7 776 60.2
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 2.9e-249 865.5 777 60.6
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 2.9e-249 865.5 778 60.8
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 2.9e-249 865.5 794 60.3
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.9e-249 865.5 758 59.2
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 6.4e-249 864.4 777 60.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 1.9e-248 862.8 775 60.1
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 1.9e-248 862.8 778 60.5
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 1.9e-248 862.8 770 60.3
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 7.1e-248 860.9 778 60.4
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 7.1e-248 860.9 778 60.4
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 9.3e-248 860.5 776 60.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 2.1e-247 859.4 776 61.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 4.6e-247 858.2 760 59.7
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 1.0e-246 857.1 748 60.7
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.3e-246 856.7 774 60.1
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 2.5e-245 852.4 789 59.6
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 4.3e-245 851.7 773 60.3
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 1.6e-244 849.7 716 64.4
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 8.2e-244 847.4 773 59.6
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 1.4e-243 846.7 736 61.3
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 6.9e-243 844.3 772 58.3
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.0e-243 844.0 458 99.8
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 4.5e-242 841.6 773 59.6
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 7.6e-242 840.9 784 58.5
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 1.3e-241 840.1 778 59.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 6.5e-241 837.8 782 58.6
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 1.4e-240 836.6 772 59.3
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 4.6e-239 831.6 779 58.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.2e-232 808.5 756 56.9
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.4e-230 803.5 732 57.8
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 4.3e-229 798.5 795 56.0
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 2.4e-227 792.7 783 56.8
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 5.9e-226 788.1 748 57.4
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 5.0e-225 785.0 773 56.3
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 7.4e-221 771.2 785 56.9
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 3.5e-218 762.3 756 55.8
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 5.2e-214 748.4 755 57.2
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 8.0e-207 724.5 771 53.3
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.8e-203 713.4 611 60.4
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.8e-203 713.4 636 60.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 7.0e-203 711.4 694 58.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 4.1e-195 685.6 801 50.8
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 8.3e-188 661.4 607 58.5
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.6e-186 657.1 760 50.9
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 2.0e-186 656.8 663 52.6
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 4.3e-176 622.5 750 50.0
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.1e-168 597.8 301 100.0
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-165 587.8 541 60.1
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 5.8e-157 558.9 798 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 6.0e-154 548.9 909 40.2
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.3e-150 535.8 750 45.7
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 8.1e-143 511.9 813 41.7
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.1e-142 511.5 755 43.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.1e-142 510.0 264 99.6
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 6.7e-121 439.1 627 43.9
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 4.1e-118 429.9 413 55.9
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-116 422.5 218 99.5
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 2.2e-100 370.9 881 31.2
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.0e-81 308.9 170 95.3
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 4.9e-71 273.5 313 50.2
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 7.8e-69 266.2 167 81.4
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.0e-60 239.2 409 41.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.9e-59 235.0 167 71.9
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 4.6e-45 187.2 501 31.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.9e-43 181.8 298 38.9
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.4e-41 174.9 87 100.0
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.7e-39 168.7 219 46.1
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 2.3e-36 158.3 104 76.0
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.3e-35 154.5 80 100.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.3e-35 154.5 80 100.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.6e-34 152.1 359 33.4
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 2.1e-34 151.8 114 68.4
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.4e-33 149.1 231 39.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.2e-30 137.5 71 97.2
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 1.7e-28 132.1 82 76.8
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 6.4e-23 113.6 104 56.7
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.1e-22 112.8 113 53.1
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.8e-10 71.6 58 56.9
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.6e-08 65.1 51 58.8
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.2e-07 62.0 148 27.7
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 3.8e-07 61.2 134 27.6
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 6.5e-07 60.5 37 78.4
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 1.1e-06 59.7 144 29.9
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.9e-06 58.9 134 26.9
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 1.9e-06 58.9 135 27.4
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.9e-06 58.9 38 73.7
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 2.5e-06 58.5 135 26.7
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 2.5e-06 58.5 135 28.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 2.5e-06 58.5 134 26.9
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 4.2e-06 57.8 135 26.7
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 4.2e-06 57.8 139 25.2
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 4.2e-06 57.8 134 26.1
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 4.2e-06 57.8 135 25.9
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 4.2e-06 57.8 135 26.7
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 5.5e-06 57.4 135 23.7
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 9.3e-06 56.6 135 25.2
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 9.3e-06 56.6 135 26.7
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 9.3e-06 56.6 134 26.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 9.3e-06 56.6 135 26.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 9.3e-06 56.6 135 25.9


User provided reference genes

Program Settings