Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 0.0e+00 1504.6 779 100.0
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 0.0e+00 1477.6 780 97.9
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 0.0e+00 1454.9 781 96.3
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 0.0e+00 1386.3 783 92.6
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 0.0e+00 1226.8 791 80.8
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 0.0e+00 1223.0 787 79.4
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 0.0e+00 1219.1 788 79.4
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 0.0e+00 1207.6 785 78.7
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 0.0e+00 1204.9 790 79.9
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 0.0e+00 1201.4 799 79.7
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 0.0e+00 1201.0 790 79.6
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 0.0e+00 1200.3 786 80.2
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 0.0e+00 1199.1 790 79.9
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 0.0e+00 1197.6 786 80.2
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 0.0e+00 1196.0 780 79.6
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 0.0e+00 1195.6 790 79.0
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1194.5 789 78.6
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 0.0e+00 1194.5 790 78.6
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 0.0e+00 1189.1 791 78.8
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 0.0e+00 1188.7 790 79.1
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 0.0e+00 1188.3 788 79.8
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 0.0e+00 1187.9 788 79.8
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 0.0e+00 1187.2 788 79.7
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 0.0e+00 1183.3 790 78.1
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 0.0e+00 1180.6 789 77.8
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 0.0e+00 1179.5 790 77.8
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1176.0 796 76.3
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1171.0 786 77.2
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 0.0e+00 1170.6 789 77.7
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 0.0e+00 1169.8 788 77.5
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 0.0e+00 1166.8 790 77.1
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 0.0e+00 1166.0 790 76.3
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 0.0e+00 1164.4 790 76.7
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 0.0e+00 1162.5 787 77.4
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1157.9 788 76.9
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1157.1 802 75.1
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1156.0 821 73.6
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 0.0e+00 1155.2 787 76.9
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 0.0e+00 1152.1 786 76.5
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 0.0e+00 1150.2 788 75.9
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 0.0e+00 1147.5 792 76.4
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 0.0e+00 1147.1 788 75.8
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 0.0e+00 1144.8 788 75.8
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 0.0e+00 1144.0 784 76.5
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 0.0e+00 1141.7 746 80.2
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 0.0e+00 1141.3 786 76.2
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1140.9 790 75.4
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 0.0e+00 1139.0 786 76.1
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 0.0e+00 1136.3 786 75.8
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 0.0e+00 1132.1 792 74.4
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1124.4 786 75.3
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 0.0e+00 1124.4 790 75.7
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 0.0e+00 1122.5 811 72.9
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1122.1 786 75.2
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 0.0e+00 1120.5 790 74.3
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 0.0e+00 1114.4 787 72.9
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 0.0e+00 1112.8 747 79.1
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 0.0e+00 1112.8 787 73.1
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 0.0e+00 1112.4 785 75.3
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 0.0e+00 1111.3 788 73.9
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 0.0e+00 1109.4 784 74.6
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 0.0e+00 1104.4 794 74.6
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 0.0e+00 1099.0 764 77.1
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 0.0e+00 1098.6 785 74.1
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 0.0e+00 1095.9 791 72.8
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 0.0e+00 1092.0 790 72.5
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 0.0e+00 1090.5 788 72.8
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 0.0e+00 1086.6 792 72.7
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 0.0e+00 1082.0 793 72.4
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1081.2 791 72.6
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1078.9 791 72.4
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 0.0e+00 1078.5 792 72.1
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 0.0e+00 1078.5 790 71.4
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1077.8 789 72.9
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 0.0e+00 1077.4 791 72.3
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 0.0e+00 1077.4 792 72.0
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 0.0e+00 1076.6 791 72.3
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 0.0e+00 1076.6 792 72.1
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1075.5 792 72.9
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.6e-311 1072.4 786 71.6
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 3.7e-311 1071.2 792 71.3
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 2.3e-310 1068.5 788 71.4
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 2.6e-309 1065.1 787 71.9
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.3e-308 1062.8 783 71.4
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 6.4e-308 1060.4 740 75.8
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.9e-307 1058.9 797 70.3
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 2.4e-307 1058.5 789 70.2
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 2.4e-307 1058.5 786 71.4
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 7.1e-307 1057.0 745 74.9
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 1.6e-306 1055.8 790 70.3
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.0e-305 1053.1 790 69.9
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 6.7e-305 1050.4 789 70.5
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 5.6e-304 1047.3 805 68.6
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 6.2e-303 1043.9 789 70.2
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 6.9e-302 1040.4 786 70.4
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 4.2e-299 1031.2 788 68.9
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 5.5e-299 1030.8 742 73.0
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 4.6e-298 1027.7 794 69.1
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 1.4e-294 1016.1 829 67.6
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 6.5e-292 1007.3 754 70.2
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 6.1e-290 1000.7 745 71.1
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.5e-288 996.1 788 67.5
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.5e-285 986.1 783 67.6
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 2.0e-285 985.7 744 71.1
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.0e-285 985.7 789 67.0
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.7e-282 975.3 510 98.8
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 1.4e-281 973.0 786 65.1
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 1.4e-281 973.0 784 67.6
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.1e-280 969.9 689 73.0
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 5.7e-272 941.0 790 64.4
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 8.2e-271 937.2 767 66.1
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 1.1e-270 936.8 790 64.3
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 3.8e-268 928.3 794 63.9
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 7.4e-264 914.1 783 62.7
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 1.8e-262 909.4 745 67.1
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.5e-259 899.8 787 61.6
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 3.2e-259 898.7 787 61.8
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 7.5e-256 887.5 718 66.4
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 5.4e-254 881.3 643 72.0
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 7.5e-224 781.2 701 62.8
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 4.1e-222 775.4 563 73.0
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 1.8e-209 733.4 561 70.8
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 3.5e-205 719.2 682 61.0
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 1.2e-200 704.1 585 64.8
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 1.1e-193 681.0 448 78.1
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 1.9e-179 633.6 800 46.4
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 8.2e-170 601.7 398 78.1
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.7e-167 594.0 668 52.2
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 7.9e-165 585.1 810 44.0
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 1.3e-159 567.8 385 78.2
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 5.1e-156 555.8 390 73.8
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 4.1e-145 519.6 362 77.9
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 1.7e-143 514.2 789 39.7
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 2.1e-133 480.7 480 57.5
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 1.1e-126 458.4 326 73.3
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 1.0e-124 451.8 660 43.5
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 1.5e-110 404.8 785 39.0
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 3.1e-108 397.1 264 77.7
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 3.3e-102 377.1 268 72.0
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 3.6e-101 373.6 267 70.8
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 2.3e-100 370.9 389 54.5
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 8.9e-100 369.0 283 67.5
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 6.6e-95 352.8 280 69.6
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 1.2e-88 332.0 301 62.5
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 6.4e-74 283.1 192 82.8
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.8e-68 265.0 1252 24.5
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 1.9e-49 201.8 130 76.2
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 2.0e-38 165.2 630 29.2
TPR.G13595 Trifolium pratense HOM05D004035 ORTHO05D004631 7.0e-36 156.8 141 66.0
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 2.6e-35 154.8 114 65.8
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 4.2e-33 147.5 796 25.4
Lsat_1_v5_gn_8_105180 Lactuca sativa HOM05D004035 ORTHO05D004631 2.3e-31 141.7 206 48.5
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 8.8e-31 139.8 109 66.1
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 8.8e-31 139.8 237 42.6
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 1.2e-30 139.4 96 66.7
SHI32100 Sapria himalayana HOM05D004035 ORTHO05D000001 5.9e-27 127.1 98 65.3
ATR0800G151 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.1e-25 122.9 195 39.0
SHI32097 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-24 118.2 91 63.7
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 8.3e-21 106.7 307 33.2
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 2.0e-19 102.1 101 58.4
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 2.0e-19 102.1 101 58.4
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 6.5e-18 97.1 48 93.8
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 2.7e-11 75.1 107 36.4
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 2.5e-09 68.6 818 21.3
Medtr8g072800 Medicago truncatula HOM05D004035 ORTHO05D004631 4.7e-08 64.3 58 55.2
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 1.2e-06 59.7 720 19.6
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 1.2e-06 59.7 172 26.7
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 1.2e-06 59.7 800 20.2
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 2.6e-06 58.5 116 28.4
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 2.6e-06 58.5 800 20.4
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 3.4e-06 58.2 111 30.6
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 4.4e-06 57.8 123 27.6
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 4.4e-06 57.8 123 27.6
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 7.5e-06 57.0 163 26.4
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 9.8e-06 56.6 123 26.8


User provided reference genes

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