Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.6e-47 192.6 106 100.0
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.8e-38 161.4 89 100.0
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.8e-38 161.4 89 100.0
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.8e-38 161.4 89 100.0
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.5e-29 132.9 81 88.9
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 4.4e-26 121.3 78 85.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 2.9e-25 118.6 89 76.4
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.0e-18 95.9 80 63.8
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 4.4e-18 94.7 93 61.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 4.4e-18 94.7 81 65.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 5.8e-18 94.4 85 63.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 1.7e-17 92.8 81 65.4
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 1.7e-17 92.8 80 63.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 1.7e-17 92.8 83 62.7
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 2.2e-17 92.4 79 67.1
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 1.4e-16 89.7 93 58.1
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 5.4e-16 87.8 93 57.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 1.2e-15 86.7 84 54.8
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.2e-15 86.7 81 59.3
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 1.6e-15 86.3 84 58.3
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 2.1e-15 85.9 91 59.3
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 2.7e-15 85.5 90 54.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 2.7e-15 85.5 85 60.0
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 6.0e-15 84.3 84 58.3
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 1.3e-14 83.2 80 58.8
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.3e-14 83.2 83 59.0
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.3e-14 83.2 83 59.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 1.7e-14 82.8 80 60.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 2.3e-14 82.4 88 59.1
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 3.0e-14 82.0 80 58.8
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 3.0e-14 82.0 74 63.5
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 5.1e-14 81.3 85 58.8
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 5.1e-14 81.3 81 55.6
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 6.6e-14 80.9 106 56.6
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 8.6e-14 80.5 79 55.7
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 1.1e-13 80.1 86 52.3
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 1.1e-13 80.1 84 53.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 1.5e-13 79.7 89 51.7
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.5e-13 79.7 84 56.0
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 1.5e-13 79.7 90 52.2
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.9e-13 79.3 77 54.5
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 1.9e-13 79.3 84 54.8
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 2.5e-13 79.0 81 54.3
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 2.5e-13 79.0 90 52.2
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.3e-13 78.2 84 59.5
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 4.3e-13 78.2 93 48.4
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 4.3e-13 78.2 84 53.6
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 7.3e-13 77.4 89 52.8
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.1e-12 75.9 75 58.7
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 2.1e-12 75.9 84 51.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 2.8e-12 75.5 89 50.6
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 2.8e-12 75.5 84 48.8
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 2.8e-12 75.5 84 48.8
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 2.8e-12 75.5 85 52.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 3.6e-12 75.1 79 57.0
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 6.2e-12 74.3 88 55.7
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 6.2e-12 74.3 89 55.1
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 8.1e-12 73.9 88 54.5
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 1.1e-11 73.6 84 47.6
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 1.8e-11 72.8 87 51.7
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 2.3e-11 72.4 75 56.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 2.3e-11 72.4 92 50.0
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 2.3e-11 72.4 92 50.0
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 2.3e-11 72.4 74 60.8
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 3.1e-11 72.0 75 53.3
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 3.1e-11 72.0 75 53.3
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.0e-11 71.6 84 47.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 5.2e-11 71.2 75 52.0
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 5.2e-11 71.2 90 45.6
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 5.2e-11 71.2 75 52.0
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 5.2e-11 71.2 75 52.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 5.2e-11 71.2 93 47.3
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 8.9e-11 70.5 78 53.8
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 8.9e-11 70.5 75 54.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 1.5e-10 69.7 77 50.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 1.5e-10 69.7 84 51.2
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 2.0e-10 69.3 74 58.1
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 9.9e-10 67.0 75 50.7
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 9.9e-10 67.0 67 56.7
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 3.8e-09 65.1 75 50.7
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 4.9e-09 64.7 71 52.1
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 6.4e-09 64.3 78 51.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 8.4e-09 63.9 75 50.7
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 8.4e-09 63.9 57 61.4
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 3.2e-08 62.0 90 47.8
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 4.1e-08 61.6 84 45.2
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 4.1e-08 61.6 49 61.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 5.4e-08 61.2 84 45.2
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 9.2e-08 60.5 63 57.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.2e-07 60.1 67 52.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 2.1e-07 59.3 84 44.0
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 2.7e-07 58.9 51 56.9
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 3.5e-07 58.5 69 55.1
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.0e-06 57.0 84 47.6
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 1.7e-06 56.2 53 52.8
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 1.7e-06 56.2 88 46.6
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.3e-06 55.8 50 62.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.9e-06 55.1 84 46.4
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 6.6e-06 54.3 62 51.6


User provided reference genes

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