Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.1e-271 937.9 498 100.0
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-245 850.5 452 100.0
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 4.8e-232 807.7 500 86.4
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 5.0e-221 771.2 487 85.2
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 8.6e-197 690.6 500 74.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 5.5e-196 688.0 503 74.2
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 9.5e-196 687.2 407 91.9
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 6.1e-195 684.5 498 72.9
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 1.0e-194 683.7 501 72.7
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 2.9e-192 675.6 501 72.3
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 2.9e-192 675.6 502 72.1
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 3.9e-189 665.2 501 71.1
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 2.5e-188 662.5 507 69.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 3.3e-188 662.1 501 70.9
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 3.3e-188 662.1 500 70.2
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 4.3e-188 661.8 497 71.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 5.6e-188 661.4 500 71.0
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.2e-187 660.2 504 70.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 2.8e-187 659.1 498 70.1
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 2.8e-187 659.1 498 69.9
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 6.2e-187 657.9 501 70.7
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 6.2e-187 657.9 501 70.5
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 6.2e-187 657.9 499 69.5
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 2.3e-186 656.0 498 69.3
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 4.0e-186 655.2 500 71.8
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 4.0e-186 655.2 504 70.0
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 8.9e-186 654.1 502 70.7
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 2.0e-185 652.9 505 70.1
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 3.4e-185 652.1 500 69.8
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 7.5e-185 651.0 505 69.7
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 4.9e-184 648.3 500 68.4
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 1.1e-183 647.1 500 68.2
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 2.4e-183 646.0 498 68.5
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 3.2e-183 645.6 507 69.2
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 7.0e-183 644.4 502 68.7
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 1.2e-182 643.7 503 68.8
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 2.0e-182 642.9 500 67.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 6.0e-182 641.3 470 71.3
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 1.0e-181 640.6 507 69.0
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 2.3e-181 639.4 504 67.5
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 2.3e-181 639.4 500 67.6
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 6.6e-181 637.9 506 68.6
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.3e-180 635.2 500 67.2
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 4.3e-180 635.2 504 68.3
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 4.3e-180 635.2 502 68.9
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 5.6e-180 634.8 501 68.5
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.2e-179 633.6 500 68.0
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 3.6e-179 632.1 504 68.7
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 3.6e-179 632.1 500 68.2
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 4.0e-178 628.6 500 67.6
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 8.9e-178 627.5 506 67.0
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 2.6e-177 625.9 503 67.6
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 2.6e-177 625.9 503 67.6
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 4.4e-177 625.2 498 68.3
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 7.5e-177 624.4 528 66.3
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 9.8e-177 624.0 500 68.0
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.3e-176 623.6 502 67.5
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 1.7e-176 623.2 540 65.0
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 2.2e-176 622.9 506 67.4
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 2.2e-176 622.9 500 68.2
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.9e-176 622.5 500 67.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 4.9e-176 621.7 500 67.8
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 1.9e-175 619.8 500 67.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 2.1e-174 616.3 496 66.9
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 1.0e-173 614.0 500 67.0
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 1.0e-173 614.0 502 65.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 8.6e-173 610.9 502 67.5
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 1.1e-172 610.5 500 66.0
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 1.5e-172 610.1 502 65.9
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.5e-172 610.1 505 66.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 3.3e-172 609.0 538 62.8
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 3.3e-172 609.0 504 65.3
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 4.3e-172 608.6 500 67.0
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.3e-172 607.8 505 66.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 7.3e-172 607.8 504 65.5
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 2.8e-171 605.9 500 65.2
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.1e-170 604.0 472 68.9
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 1.4e-170 603.6 500 67.2
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 1.4e-170 603.6 507 65.3
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 1.3e-168 597.0 500 66.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 6.4e-168 594.7 498 64.3
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 1.4e-167 593.6 499 64.5
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 5.4e-167 591.7 497 65.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 2.5e-164 582.8 506 64.0
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 8.1e-163 577.8 531 62.0
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 2.9e-160 569.3 505 62.6
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.4e-159 565.1 505 63.6
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 5.6e-156 555.1 498 63.3
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 2.6e-153 546.2 373 76.7
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 4.2e-151 538.9 403 71.7
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 9.3e-151 537.7 384 74.5
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.7e-149 533.5 508 61.6
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 1.7e-149 533.5 476 62.4
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.6e-147 525.8 504 59.9
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.1e-146 524.2 495 60.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 3.1e-146 522.7 380 71.1
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 4.5e-145 518.8 503 59.2
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 7.6e-145 518.1 503 59.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 9.3e-143 511.1 522 58.2
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.5e-142 509.2 264 99.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 2.5e-140 503.1 502 58.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.0e-121 440.3 341 68.9
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.2e-119 432.6 344 66.6
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 6.1e-118 428.7 443 53.0
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 1.5e-116 424.1 439 53.5
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 6.3e-115 418.7 500 48.8
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 2.4e-114 416.8 495 51.5
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 9.1e-114 414.8 488 50.8
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.0e-109 399.8 500 50.0
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 9.7e-108 394.8 340 65.3
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 6.3e-107 392.1 324 64.5
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.2e-105 387.9 415 51.3
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 7.7e-89 332.0 206 80.6
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 8.5e-88 328.6 206 80.1
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.8e-84 315.1 363 52.6
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 5.4e-82 309.3 369 44.7
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 2.1e-78 297.4 273 63.0
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 8.9e-69 265.4 387 40.3
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 3.3e-63 246.9 168 71.4
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.6e-62 243.4 498 38.8
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 6.8e-61 239.2 350 39.4
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 6.4e-51 206.1 472 37.7
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 4.6e-49 199.9 234 52.6
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 5.6e-47 193.0 96 99.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.1e-46 191.0 126 75.4
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.4e-37 161.0 89 100.0
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 8.1e-30 136.0 96 70.8
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-28 132.1 82 76.8
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.5e-28 131.7 96 64.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.2e-26 124.0 189 46.0
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.2e-26 124.0 114 56.1
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.1e-18 99.0 93 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 7.4e-15 86.3 62 59.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.5e-10 71.2 52 69.2
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.5e-07 62.0 148 27.7
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 1.9e-07 61.6 89 42.7
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 2.5e-07 61.2 134 27.6
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 4.3e-07 60.5 63 57.1
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 7.4e-07 59.7 144 29.9
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.3e-06 58.9 134 26.9
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 1.3e-06 58.9 135 27.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.6e-06 58.5 135 26.7
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.6e-06 58.5 135 28.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.6e-06 58.5 134 26.9
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 2.8e-06 57.8 135 26.7
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 2.8e-06 57.8 139 25.2
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 2.8e-06 57.8 134 26.1
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 2.8e-06 57.8 135 25.9
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 2.8e-06 57.8 135 25.9
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 2.8e-06 57.8 135 26.7
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 3.7e-06 57.4 135 23.7
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 6.3e-06 56.6 135 25.2
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 6.3e-06 56.6 135 26.7
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 6.3e-06 56.6 134 26.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 6.3e-06 56.6 135 26.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 6.3e-06 56.6 135 25.9
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 8.2e-06 56.2 135 25.9
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 8.2e-06 56.2 134 26.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 8.2e-06 56.2 134 26.9
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 8.2e-06 56.2 134 25.4


User provided reference genes

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