Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.6e-175 618.6 313 100.0
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.6e-175 617.1 313 99.7
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.1e-169 599.0 301 100.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.1e-161 572.4 301 95.0
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 4.3e-146 521.5 294 88.8
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 1.9e-141 506.1 320 81.2
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 4.8e-105 385.2 328 62.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 6.3e-105 384.8 324 63.9
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 1.8e-104 383.3 321 62.9
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 3.1e-104 382.5 329 61.7
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 4.1e-104 382.1 333 63.4
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 5.3e-104 381.7 329 61.1
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 5.3e-104 381.7 332 62.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 9.1e-104 380.9 327 61.2
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 1.2e-103 380.6 321 62.6
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 2.0e-103 379.8 328 60.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 4.5e-103 378.6 328 61.3
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 4.5e-103 378.6 328 61.3
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 4.5e-103 378.6 328 61.0
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 2.2e-102 376.3 318 62.9
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 2.9e-102 375.9 328 59.5
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 6.5e-102 374.8 315 63.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 6.5e-102 374.8 327 59.0
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 1.5e-101 373.6 329 62.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.5e-101 373.6 327 58.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 1.9e-101 373.2 322 60.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 1.9e-101 373.2 328 60.7
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 1.9e-101 373.2 328 61.3
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 5.5e-101 371.7 328 58.8
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 9.4e-101 370.9 328 58.8
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 2.1e-100 369.8 329 60.8
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 3.6e-100 369.0 322 61.5
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 4.7e-100 368.6 329 60.8
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.4e-99 367.1 325 60.9
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 2.3e-99 366.3 309 62.8
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 4.0e-99 365.5 321 58.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 5.2e-99 365.2 328 57.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 8.8e-99 364.4 329 60.5
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 8.8e-99 364.4 329 60.2
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 8.8e-99 364.4 327 61.2
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 2.6e-98 362.8 309 62.1
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 5.7e-98 361.7 322 62.4
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 5.7e-98 361.7 326 60.1
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 1.7e-97 360.1 309 60.8
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 2.2e-97 359.8 334 57.2
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 2.2e-97 359.8 326 60.1
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 3.7e-97 359.0 307 62.5
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 4.8e-97 358.6 309 60.5
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.8e-97 358.6 309 60.5
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 6.3e-97 358.2 327 59.6
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 8.3e-97 357.8 323 58.8
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.1e-96 357.5 332 53.9
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 2.4e-96 356.3 332 56.9
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.1e-96 355.9 332 53.6
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 1.2e-95 354.0 329 59.3
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.2e-95 354.0 306 61.1
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 2.0e-95 353.2 331 58.9
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 2.7e-95 352.8 328 57.3
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 3.8e-94 349.0 322 57.1
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 3.8e-94 349.0 327 56.9
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 1.1e-93 347.4 325 58.2
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 2.5e-93 346.3 327 56.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 3.3e-93 345.9 327 56.6
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 2.1e-92 343.2 331 55.6
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 2.1e-92 343.2 326 55.5
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 2.1e-92 343.2 310 58.1
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 3.6e-92 342.4 333 56.5
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.0e-91 340.9 316 57.3
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 2.3e-91 339.7 320 55.9
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 4.0e-91 339.0 304 59.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 6.8e-91 338.2 326 55.2
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.2e-90 337.4 321 57.6
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 2.0e-90 336.7 322 55.3
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 3.4e-90 335.9 326 55.8
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 7.5e-90 334.7 325 56.0
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 2.8e-89 332.8 326 54.3
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 2.8e-89 332.8 327 56.0
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.3e-89 331.6 332 50.9
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 8.3e-89 331.3 329 55.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.6e-87 327.0 327 54.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 2.7e-87 326.2 327 53.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 1.7e-86 323.6 324 55.9
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 2.3e-86 323.2 324 55.2
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 6.6e-86 321.6 328 52.7
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.6e-86 321.6 330 51.2
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 6.6e-86 321.6 317 53.9
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 1.5e-85 320.5 326 54.3
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 3.3e-85 319.3 320 53.8
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 4.3e-85 318.9 327 52.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 4.3e-85 318.9 327 52.9
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 4.3e-85 318.9 327 52.9
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 5.6e-85 318.5 327 53.8
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 7.3e-85 318.2 327 52.9
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 7.3e-85 318.2 335 52.5
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 9.5e-85 317.8 327 53.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 9.5e-85 317.8 327 52.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 1.2e-84 317.4 327 52.6
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 3.6e-84 315.8 327 52.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 3.6e-84 315.8 327 53.2
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 8.0e-84 314.7 248 66.9
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 1.0e-83 314.3 325 52.6
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 2.3e-83 313.2 318 55.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 7.5e-82 308.1 327 53.2
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 2.4e-80 303.1 312 51.9
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 7.0e-80 301.6 311 53.4
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.0e-78 297.7 307 52.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.3e-78 297.4 314 49.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 2.3e-78 296.6 327 50.2
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 5.0e-78 295.4 314 52.5
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 7.3e-77 291.6 254 59.8
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 4.7e-76 288.9 327 49.8
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.7e-73 280.4 339 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.1e-54 215.7 359 40.4
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 4.3e-53 212.6 298 43.6
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.4e-48 197.6 332 39.2
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 6.0e-47 192.2 322 38.8
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-41 174.1 92 100.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-41 174.1 92 100.0
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 9.0e-35 151.8 114 68.4
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 6.4e-33 145.6 355 29.0
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 1.0e-30 138.3 148 49.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.3e-30 137.1 71 97.2
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.2e-28 129.0 167 43.7
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 4.6e-23 112.8 113 53.1
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.2e-20 104.0 264 31.4
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.4e-10 70.1 97 46.4
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.1e-08 65.1 51 58.8
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 5.5e-08 62.8 42 69.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.4e-06 58.2 49 65.3
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 5.1e-06 56.2 37 73.0


User provided reference genes

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