Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 0.0e+00 1504.6 813 100.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 0.0e+00 1402.9 801 93.1
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1257.7 812 83.3
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1151.3 822 75.5
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 1.1e-254 883.6 839 58.8
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 1.9e-249 866.3 837 58.1
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 3.5e-248 862.1 837 57.5
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 6.8e-244 847.8 834 56.1
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.4e-243 845.1 458 99.8
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 3.8e-242 842.0 835 56.0
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 6.4e-242 841.3 830 56.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 6.6e-239 831.2 837 55.9
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 1.5e-238 830.1 838 56.2
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 1.2e-235 820.5 819 56.4
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.6e-232 810.1 826 55.9
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 7.8e-232 807.7 847 55.4
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 7.8e-232 807.7 843 55.4
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 1.0e-231 807.4 835 55.0
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 6.2e-229 798.1 838 54.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.1e-228 797.3 839 54.9
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 3.1e-228 795.8 843 53.3
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 3.1e-228 795.8 837 54.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 4.5e-227 792.0 837 54.2
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 5.8e-227 791.6 837 54.1
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 2.2e-226 789.6 835 54.0
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 5.4e-225 785.0 844 52.8
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 5.6e-222 775.0 838 54.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 6.2e-221 771.5 837 53.6
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 8.1e-221 771.2 816 53.4
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.8e-220 770.0 835 53.3
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 6.4e-218 761.5 843 51.2
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.9e-217 760.0 837 52.7
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 7.1e-217 758.1 844 51.5
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 1.2e-216 757.3 842 52.5
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 7.9e-216 754.6 828 51.4
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 6.7e-215 751.5 838 52.9
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 8.7e-215 751.1 828 51.2
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 2.5e-214 749.6 817 53.2
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 3.7e-213 745.7 846 52.1
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 6.9e-212 741.5 827 51.9
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 3.4e-211 739.2 834 51.3
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 5.8e-211 738.4 838 50.0
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.3e-210 737.3 834 50.7
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 2.9e-210 736.1 836 50.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 4.2e-209 732.3 816 52.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 3.5e-208 729.2 830 51.7
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.0e-207 727.6 763 53.7
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 1.3e-207 727.2 835 49.1
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 5.1e-207 725.3 828 51.3
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 8.7e-207 724.5 835 50.5
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 1.5e-206 723.8 837 49.6
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.9e-206 723.4 754 54.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 2.5e-206 723.0 837 49.6
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 9.7e-206 721.1 838 49.4
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 1.6e-205 720.3 817 52.4
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 6.3e-205 718.4 814 52.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 8.2e-205 718.0 833 50.4
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 1.4e-204 717.2 843 48.8
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 9.0e-204 714.5 841 50.3
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.2e-203 714.1 841 50.1
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 4.5e-203 712.2 809 51.5
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 4.2e-201 705.7 886 48.9
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 2.7e-200 703.0 839 49.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 1.0e-199 701.0 859 48.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.8e-199 700.3 834 48.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 3.3e-198 696.0 835 48.7
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 5.7e-198 695.3 843 49.7
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 9.7e-198 694.5 838 48.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 4.1e-196 689.1 821 48.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 3.4e-195 686.0 826 48.9
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 1.4e-193 680.6 840 47.7
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 2.5e-193 679.9 801 49.4
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 9.4e-193 677.9 832 46.9
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 4.7e-192 675.6 849 49.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 1.0e-191 674.5 801 49.1
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 1.4e-191 674.1 825 48.4
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 1.8e-191 673.7 654 55.0
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.3e-191 673.3 754 48.8
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 8.8e-191 671.4 800 49.5
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 1.1e-190 671.0 806 48.9
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 1.5e-190 670.6 801 48.6
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.6e-190 669.8 840 46.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 3.3e-190 669.5 853 48.2
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 4.4e-190 669.1 830 48.8
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 5.7e-190 668.7 805 48.7
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 7.4e-190 668.3 806 49.1
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 7.4e-190 668.3 804 49.1
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 2.2e-189 666.8 799 48.4
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 2.2e-189 666.8 798 48.2
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 3.7e-189 666.0 851 47.5
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.1e-184 650.2 837 46.0
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 4.7e-184 649.0 801 47.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 6.1e-184 648.7 805 47.6
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 8.8e-183 644.8 801 47.8
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 3.3e-182 642.9 874 45.8
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.3e-178 630.9 833 45.7
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.1e-177 627.9 694 51.3
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.4e-174 616.3 313 99.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 9.4e-169 598.2 799 45.3
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 6.8e-167 592.0 819 42.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 2.8e-165 586.6 756 47.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.6e-163 580.9 712 49.6
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.7e-163 580.1 818 44.6
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 3.8e-162 576.2 817 44.7
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 5.5e-161 572.4 778 45.4
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 5.5e-161 572.4 778 45.4
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.2e-139 501.5 549 51.4
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 5.1e-138 496.1 622 47.3
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.4e-124 451.4 842 36.0
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 2.4e-124 450.7 814 38.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.3e-122 444.9 819 39.9
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.1e-115 421.0 982 33.0
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.7e-97 359.8 969 31.5
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.2e-88 331.3 333 50.8
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 1.5e-86 325.1 626 36.1
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 4.3e-81 307.0 966 30.4
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.8e-74 285.0 622 34.9
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 3.7e-56 224.2 526 34.2
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.1e-55 221.1 306 44.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 5.4e-47 193.7 1023 23.5
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.1e-44 186.0 160 57.5
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.4e-41 174.1 92 100.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.4e-41 174.1 92 100.0
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 5.2e-34 150.6 114 67.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.0e-30 137.1 71 97.2
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 7.1e-23 113.6 104 56.7
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.2e-22 112.8 113 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.9e-10 70.1 97 46.4
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.9e-08 65.1 51 58.8
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 3.5e-06 58.2 49 65.3


User provided reference genes

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