Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.9e-100 368.6 194 100.0
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.3e-63 244.6 498 38.8
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 1.3e-52 210.3 450 36.7
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.3e-49 199.5 188 63.8
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.2e-42 174.9 87 100.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 8.0e-42 174.5 87 98.9
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.3e-39 167.2 103 86.4
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 1.3e-39 167.2 500 31.0
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 7.0e-38 161.4 89 100.0
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 1.4e-30 137.1 87 75.9
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 4.1e-30 135.6 87 77.0
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 4.1e-30 135.6 87 77.0
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 1.6e-29 133.7 86 75.6
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 2.7e-29 132.9 87 75.9
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.5e-29 132.5 87 75.9
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 3.5e-29 132.5 87 74.7
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 6.0e-29 131.7 87 72.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 7.8e-29 131.3 87 71.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 7.8e-29 131.3 87 72.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 7.8e-29 131.3 87 72.4
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 7.8e-29 131.3 87 73.6
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 1.3e-28 130.6 87 73.6
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 2.3e-28 129.8 87 72.4
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 2.3e-28 129.8 87 72.4
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 2.3e-28 129.8 87 72.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 2.3e-28 129.8 86 74.4
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 5.1e-28 128.6 84 72.6
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 6.6e-28 128.3 87 71.3
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 6.6e-28 128.3 87 72.4
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 1.1e-27 127.5 87 71.3
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 1.5e-27 127.1 87 72.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 2.5e-27 126.3 87 69.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 3.3e-27 125.9 87 69.0
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 5.6e-27 125.2 87 69.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 5.6e-27 125.2 84 70.2
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 5.6e-27 125.2 87 69.0
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 5.6e-27 125.2 87 69.0
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 1.2e-26 124.0 87 64.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 1.2e-26 124.0 87 64.4
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.6e-26 123.6 87 66.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 1.6e-26 123.6 84 69.0
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.1e-26 123.2 87 70.1
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 2.8e-26 122.9 87 66.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 2.8e-26 122.9 87 65.5
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 2.8e-26 122.9 87 64.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 2.8e-26 122.9 87 70.1
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 3.6e-26 122.5 87 69.0
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 6.2e-26 121.7 87 67.8
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 8.1e-26 121.3 87 66.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 8.1e-26 121.3 87 65.5
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 1.8e-25 120.2 87 65.5
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 3.1e-25 119.4 87 65.5
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 3.1e-25 119.4 87 64.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 4.0e-25 119.0 87 62.1
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 5.2e-25 118.6 83 67.5
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 6.8e-25 118.2 87 67.8
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 1.2e-24 117.5 87 64.4
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 1.5e-24 117.1 87 67.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 1.5e-24 117.1 87 64.4
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.5e-24 117.1 88 61.4
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 2.0e-24 116.7 87 62.1
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.6e-24 116.3 87 66.7
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 2.6e-24 116.3 87 63.2
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 2.6e-24 116.3 84 64.3
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 2.6e-24 116.3 87 66.7
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 3.4e-24 115.9 87 66.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 4.4e-24 115.5 87 64.4
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 4.4e-24 115.5 87 60.9
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 5.8e-24 115.2 87 65.5
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.6e-24 114.8 87 65.5
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.6e-24 114.8 87 65.5
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.6e-24 114.8 87 65.5
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 7.6e-24 114.8 87 63.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 9.9e-24 114.4 84 64.3
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 9.9e-24 114.4 84 65.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 9.9e-24 114.4 88 65.9
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 1.3e-23 114.0 87 63.2
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 1.3e-23 114.0 86 62.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.7e-23 113.6 87 58.6
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 2.2e-23 113.2 87 60.9
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 2.2e-23 113.2 87 60.9
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 2.2e-23 113.2 87 67.8
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 2.9e-23 112.8 87 63.2
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 2.9e-23 112.8 87 62.1
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 2.9e-23 112.8 87 62.1
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 3.8e-23 112.5 87 63.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 3.8e-23 112.5 87 62.1
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 3.8e-23 112.5 87 65.5
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 4.9e-23 112.1 89 66.3
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 6.4e-23 111.7 86 61.6
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 8.4e-23 111.3 87 62.1
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.1e-22 110.9 87 60.9
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 1.4e-22 110.5 87 60.9
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 1.4e-22 110.5 87 60.9
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 1.4e-22 110.5 84 60.7
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 2.4e-22 109.8 84 59.5
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 3.2e-22 109.4 87 60.9
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 5.4e-22 108.6 85 64.7
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 5.4e-22 108.6 85 62.4
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 9.2e-22 107.8 86 61.6
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.2e-21 107.5 85 61.2
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 2.7e-21 106.3 86 59.3
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 3.5e-21 105.9 84 61.9
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.6e-21 105.5 87 60.9
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.0e-21 105.1 87 59.8
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.9e-20 102.4 84 60.7
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 6.6e-20 101.7 114 50.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 2.5e-19 99.8 189 38.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 3.4e-16 89.4 87 51.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.7e-15 87.0 66 62.1
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.2e-14 82.8 83 59.0
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.2e-14 82.8 83 59.0
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 4.2e-14 82.4 65 64.6
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.6e-13 80.5 84 45.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 7.3e-11 71.6 86 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.1e-10 68.2 53 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.1e-10 68.2 53 52.8
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 8.1e-10 68.2 52 53.8
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.5e-08 63.9 45 57.8
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.6e-08 63.2 42 66.7
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.6e-08 63.2 42 66.7
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 1.7e-07 60.5 63 57.1


User provided reference genes

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