Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.8e-280 968.0 500 100.0
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 8.2e-224 780.4 509 81.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 9.5e-212 740.3 410 94.4
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.4e-207 726.5 481 81.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.0e-162 575.5 514 63.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.8e-155 552.7 512 61.3
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 3.7e-155 552.4 507 59.4
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 2.6e-153 546.2 497 60.8
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.9e-152 542.7 482 62.7
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 3.0e-149 532.7 523 58.3
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 3.9e-149 532.3 522 58.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 8.7e-149 531.2 481 61.5
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.1e-148 530.8 501 58.9
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 3.3e-148 529.3 515 57.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 5.7e-148 528.5 509 58.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 9.6e-148 527.7 515 57.9
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.6e-147 526.9 499 59.5
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.1e-147 526.6 507 59.2
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 6.2e-147 525.0 510 59.4
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.4e-145 519.2 521 56.2
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.6e-142 510.4 513 57.7
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.0e-141 507.7 508 57.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 9.7e-140 501.1 503 57.7
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 8.2e-139 498.0 525 56.0
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.4e-138 496.5 509 57.6
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.3e-136 490.7 554 55.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.2e-136 490.0 509 56.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.8e-136 489.2 454 58.6
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 6.5e-136 488.4 518 56.0
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.2e-135 486.1 511 55.6
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.1e-134 483.4 546 54.9
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 6.7e-133 478.4 369 68.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-132 477.6 494 55.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.5e-132 476.5 546 52.9
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 9.7e-132 474.6 498 56.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.2e-131 473.4 492 56.3
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.7e-131 472.6 461 59.4
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 4.8e-131 472.2 497 54.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.1e-130 469.5 455 58.5
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.6e-129 466.5 520 53.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.5e-129 465.7 497 54.7
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 7.7e-129 464.9 497 53.9
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.9e-128 463.0 515 52.4
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 5.0e-128 462.2 504 53.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 8.5e-128 461.5 460 55.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.5e-127 458.8 515 51.5
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 5.5e-127 458.8 503 53.1
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-126 455.7 524 53.2
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 6.1e-126 455.3 501 53.5
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 7.9e-126 454.9 492 54.3
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.4e-125 454.1 335 72.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 3.9e-125 452.6 521 51.6
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.7e-123 447.2 494 51.2
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.4e-122 444.1 482 51.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.3e-122 442.2 455 53.4
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.3e-122 442.2 456 55.5
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 7.7e-121 438.3 501 50.3
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.7e-121 438.3 371 60.4
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.3e-120 437.6 475 53.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.7e-120 437.2 496 52.8
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.2e-120 436.8 548 47.1
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.2e-120 436.8 537 49.5
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.2e-120 436.8 519 49.9
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.9e-120 436.4 510 52.0
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 5.0e-120 435.6 527 50.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.9e-119 433.7 525 48.4
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 3.2e-119 433.0 557 48.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 4.5e-113 412.5 533 49.0
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.7e-113 411.8 348 63.8
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.7e-112 410.6 463 54.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-112 410.2 464 51.7
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.9e-112 409.8 365 60.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.9e-112 409.8 491 49.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.9e-112 409.8 340 64.1
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 3.8e-112 409.5 470 53.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-111 407.9 485 48.9
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 4.7e-110 402.5 465 50.3
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.0e-109 399.8 368 58.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.5e-108 397.5 508 48.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 7.5e-108 395.2 495 46.9
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.2e-107 393.7 501 48.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.9e-105 385.6 460 48.0
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 7.7e-105 385.2 501 47.9
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 7.7e-105 385.2 466 47.4
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 7.7e-105 385.2 418 53.6
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.2e-104 383.6 466 51.3
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-99 367.5 477 49.1
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 8.3e-99 365.2 535 43.9
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.1e-98 364.8 421 52.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 8.6e-88 328.6 419 48.2
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.3e-87 325.5 331 56.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.0e-84 317.4 384 52.3
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.3e-83 314.7 470 43.8
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.2e-81 308.1 317 57.4
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.0e-80 303.5 380 49.7
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 5.6e-79 299.3 181 81.2
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.1e-78 295.4 220 70.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.3e-77 293.9 295 56.3
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.2e-76 291.6 354 44.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.2e-74 283.5 307 52.4
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 5.4e-74 282.7 397 42.8
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.3e-72 278.1 454 39.4
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 1.3e-67 261.5 242 57.9
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.4e-66 258.1 447 38.0
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.7e-65 253.8 285 52.6
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.0e-64 251.9 279 50.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 5.6e-63 246.1 276 50.0
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.1e-62 244.2 279 48.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.1e-62 244.2 318 44.7
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.0e-60 237.7 194 63.4
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 2.2e-59 234.2 187 65.8
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 9.3e-58 228.8 277 45.8
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 6.0e-57 226.1 146 76.0
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-56 224.6 268 51.5
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 6.6e-56 222.6 281 46.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.9e-55 221.1 156 74.4
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.9e-55 221.1 318 43.4
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 5.6e-55 219.5 289 46.7
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 7.3e-55 219.2 318 43.4
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 7.3e-55 219.2 290 45.2
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-52 211.5 166 65.1
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 7.6e-52 209.1 167 62.9
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.3e-51 208.4 165 63.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-51 207.6 282 43.3
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.6e-49 201.4 188 61.2
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.0e-48 198.7 296 40.5
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.3e-48 197.6 164 62.8
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.8e-45 188.0 181 54.1
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 3.4e-44 183.7 121 74.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.9e-39 167.9 180 50.6
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.6e-39 166.4 187 51.9
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-36 158.3 210 43.3
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.3e-35 155.2 305 34.4
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.6e-30 138.3 104 71.2
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 2.1e-30 137.9 140 56.4
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 6.3e-30 136.3 192 41.1
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.1e-29 134.0 115 65.2
MELO3C013426.2 Cucumis melo HOM05D033314 ORTHO05D029171 2.0e-28 131.3 112 66.1
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 5.5e-26 123.2 400 24.2
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-23 115.5 171 41.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 1.6e-22 111.7 284 35.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 4.8e-22 110.2 124 46.0
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.1e-21 107.1 120 46.7
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 7.2e-18 96.3 87 54.0
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 3.9e-16 90.5 178 32.0
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 4.3e-15 87.0 47 78.7
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.3e-15 87.0 65 61.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.3e-14 85.5 63 65.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.4e-13 82.0 134 39.6
MELO3C031095.2 Cucumis melo HOM05D033314 ORTHO05D029171 1.8e-13 81.6 58 77.6
MELO3C032490.2 Cucumis melo HOM05D033314 ORTHO05D029171 3.1e-13 80.9 58 75.9
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.3e-13 80.1 133 39.1
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 2.9e-11 74.3 102 43.1
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 3.2e-10 70.9 150 35.3
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-09 68.9 40 77.5
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 4.7e-09 67.0 118 40.7
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 2.3e-08 64.7 42 71.4
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 1.5e-07 62.0 51 62.7


User provided reference genes

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