Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 4.0e-84 314.7 155 100.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.0e-79 300.1 155 94.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.8e-77 292.0 155 91.6
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 85.2
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 76.8
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 76.8
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 74.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 76.8
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 76.1
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 76.1
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 74.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 72.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 73.5
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 74.2
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 74.2
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 71.0
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 70.3
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 70.3
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 73.5
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.5e-59 233.0 154 72.1
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 71.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 70.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 69.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 69.0
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 70.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 72.9
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 70.3
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 69.0
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 71.0
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 72.3
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 70.3
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.0
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 72.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 71.0
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 72.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 69.0
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 72.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.4e-57 225.7 156 72.4
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.4e-57 225.7 156 72.4
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 71.0
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.7
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 71.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 70.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 71.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 69.7
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 69.7
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 67.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 69.0
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 69.0
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 69.7
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 7.8e-56 220.7 153 70.6
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.3e-55 219.9 174 63.8
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.7e-55 219.5 155 69.7
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.7e-55 219.5 155 69.0
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.3e-55 219.2 152 67.8
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 71.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 68.4
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 69.0
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.1e-55 218.0 155 68.4
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 69.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 69.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.5e-54 216.5 155 71.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.5e-54 216.5 155 66.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.5e-54 215.7 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 4.3e-54 214.9 155 67.1
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 5.6e-54 214.5 155 69.0
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 66.5
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 3.6e-53 211.8 155 67.1
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.7e-53 211.5 155 67.7
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.7e-53 211.5 155 67.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 4.7e-53 211.5 155 65.8
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 64.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.4e-52 209.9 155 63.9
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.8e-52 209.5 149 67.8
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.4e-52 209.1 155 67.1
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 65.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 63.2
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 5.2e-52 208.0 155 66.5
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.2e-52 208.0 155 67.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.2e-51 206.8 155 65.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.2e-51 206.8 144 68.1
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.5e-51 206.5 152 69.1
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.0e-51 206.1 155 64.5
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.6e-51 205.7 155 66.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.4e-51 204.9 156 64.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 5.8e-51 204.5 152 67.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.3e-50 203.4 155 66.5
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.7e-50 203.0 214 52.3
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.9e-50 202.2 147 67.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.9e-50 201.4 151 66.2
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.4e-50 200.7 131 72.5
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.2e-49 198.7 156 64.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.2e-49 198.7 144 66.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.2e-48 196.8 147 66.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.6e-48 196.4 156 64.1
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.7e-48 195.7 156 63.5
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 4.6e-48 194.9 123 74.8
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 4.6e-48 194.9 147 65.3
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.0e-48 194.5 127 72.4
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.8e-48 194.1 149 65.8
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.6e-47 191.0 156 61.5
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 8.7e-47 190.7 156 62.2
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 8.7e-47 190.7 155 58.7
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-46 189.9 149 65.1
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.3e-46 188.3 152 63.8
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 4.3e-46 188.3 155 59.4
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.6e-45 186.4 156 61.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.8e-44 183.0 188 51.6
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 3.4e-43 178.7 155 60.0
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.9e-42 175.6 165 57.6
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.9e-42 175.6 150 57.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 4.9e-42 174.9 149 59.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 5.4e-41 171.4 154 55.2
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 7.1e-41 171.0 126 62.7
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 9.3e-41 170.6 126 62.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.2e-40 170.2 126 62.7
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.7e-40 169.1 128 62.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 4.6e-40 168.3 153 54.2
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.0e-39 165.6 101 78.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.6e-39 164.5 114 68.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.7e-39 164.1 153 52.9
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.6e-37 159.8 146 56.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.1e-37 157.5 104 73.1
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.1e-36 157.1 103 70.9
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 7.6e-35 151.0 106 64.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 9.9e-35 150.6 106 65.1
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 2.9e-34 149.1 91 78.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 5.4e-33 144.8 144 45.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 5.1e-31 138.3 109 64.2
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.6e-30 134.0 68 95.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 7.6e-27 124.4 157 43.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.7e-26 123.2 128 50.8
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.9e-26 121.7 141 48.9
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.8e-23 113.2 83 63.9
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 8.7e-23 110.9 152 45.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 4.5e-19 98.6 130 41.5
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 4.5e-19 98.6 124 41.1
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.1e-16 88.2 61 68.9
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.1e-16 88.2 61 68.9
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 6.1e-16 88.2 50 78.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 9.7e-14 80.9 128 33.6
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-12 76.6 68 58.8
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 3.8e-10 68.9 117 31.6


User provided reference genes

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