Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 0.0e+00 1435.6 707 100.0
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1322.8 740 90.0
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1282.3 706 90.4
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1262.7 706 88.0
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 708 75.6
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 708 75.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1087.4 708 75.1
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1076.2 711 74.3
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 709 74.3
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.8e-312 1074.7 706 73.9
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 9.7e-312 1072.8 708 73.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 9.7e-312 1072.8 707 75.0
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 7.3e-311 1070.1 709 74.3
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.7e-311 1069.7 706 74.2
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 9.7e-311 1069.7 712 73.5
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 1.3e-310 1069.3 709 74.6
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 2.8e-310 1068.1 709 74.0
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 709 74.6
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 1.4e-309 1065.8 699 74.2
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 3.1e-309 1064.7 707 73.1
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 3.1e-309 1064.7 708 73.0
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 1.5e-308 1062.4 708 73.0
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 698 73.5
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 709 73.9
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 4.5e-308 1060.8 703 73.1
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.0e-307 1059.7 708 72.9
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 8.4e-307 1056.6 711 72.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 8.4e-307 1056.6 708 73.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 709 72.5
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 5.1e-304 1047.3 708 72.9
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 706 72.5
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 1.6e-302 1042.3 700 72.1
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.4e-301 1039.3 701 72.3
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 1.8e-301 1038.9 712 71.9
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 3.1e-301 1038.1 710 71.7
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 5.3e-301 1037.3 704 72.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.9e-301 1036.9 707 70.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 1.2e-300 1036.2 707 71.6
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.6e-300 1035.0 701 71.0
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 7.6e-300 1033.5 710 71.8
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 698 72.6
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 703 71.4
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 793 66.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 709 71.9
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 2.2e-299 1031.9 703 71.7
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 698 72.5
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 708 71.5
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 710 71.5
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 9.3e-298 1026.5 708 71.3
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 702 71.2
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 3.0e-296 1021.5 701 70.9
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.1e-296 1020.8 702 70.5
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 6.7e-296 1020.4 696 72.1
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 2.5e-295 1018.5 706 71.0
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 5.7e-295 1017.3 708 70.5
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.4e-293 1012.7 713 70.5
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 2.0e-292 1008.8 708 71.2
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 2.0e-292 1008.8 711 70.5
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.5e-291 1003.4 728 69.6
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 730 69.2
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.6e-289 999.2 725 69.4
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.8e-288 995.7 707 71.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 2.3e-288 995.3 706 69.4
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 2.4e-285 985.3 702 69.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 5.3e-285 984.2 707 70.3
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.0e-280 969.9 669 71.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 3.0e-280 968.4 700 68.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 6.7e-280 967.2 703 68.3
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.5e-279 966.1 695 68.3
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.3e-279 964.9 702 68.4
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 4.4e-279 964.5 702 68.2
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 7.4e-279 963.8 702 68.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.3e-278 963.0 703 68.0
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.7e-278 962.6 701 66.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 4.1e-277 958.0 703 68.3
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.7e-275 952.6 682 67.4
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.2e-275 952.2 692 66.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 8.5e-275 950.3 702 66.8
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 7.2e-274 947.2 708 66.0
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.2e-273 946.4 703 68.0
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 6.1e-273 944.1 711 66.4
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.8e-272 942.6 708 66.0
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 3.5e-268 928.3 777 60.0
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.9e-267 925.2 758 61.6
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 4.7e-265 917.9 689 64.6
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 6.8e-264 914.1 703 64.2
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.7e-259 899.4 703 65.4
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 6.3e-254 880.9 710 62.1
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.1e-253 878.6 710 62.0
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 7.8e-252 874.0 586 72.5
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.5e-250 869.8 594 71.0
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.3e-250 868.6 675 63.9
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.5e-247 859.8 714 61.2
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.4e-245 853.2 715 62.1
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 5.4e-245 851.3 557 73.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.7e-235 819.7 707 60.4
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.3e-227 792.7 543 71.8
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 8.1e-217 757.7 526 71.5
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 4.2e-213 745.3 688 54.9
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.1e-208 729.2 688 53.5
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.0e-196 688.3 741 53.3
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.1e-186 657.5 696 49.6
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 1.9e-173 613.6 869 41.7
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.8e-171 607.1 449 66.1
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 5.2e-163 578.9 843 41.0
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 3.3e-162 576.2 687 45.7
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 4.2e-157 559.3 383 69.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 4.4e-154 549.3 490 57.8
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.6e-143 514.2 750 41.3
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.0e-139 501.5 744 41.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.8e-124 450.3 748 38.8
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 3.4e-122 443.4 812 36.3
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 9.2e-120 435.3 720 36.4
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 1.1e-117 428.3 336 67.9
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 4.4e-114 416.4 303 70.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.7e-111 407.1 358 58.9
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.7e-73 281.6 274 53.6
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.7e-69 265.8 201 65.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 4.6e-63 246.9 182 67.6
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.3e-52 212.2 132 77.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.1e-51 206.1 164 61.6
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 4.2e-40 170.6 113 74.3
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 3.0e-38 164.5 102 77.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.0e-34 151.8 173 52.6
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 3.2e-32 144.4 115 58.3
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.8e-28 131.3 100 67.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.6e-23 115.5 107 53.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.8e-19 102.1 61 78.7
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.4e-19 101.7 148 41.9
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.9e-17 94.4 81 58.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.5e-13 82.4 59 64.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.9e-11 75.5 38 89.5
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.2e-10 72.8 61 57.4
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.2e-07 62.8 46 60.9


User provided reference genes

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