Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 0.0e+00 1457.6 755 100.0
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 0.0e+00 1290.0 793 86.1
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 0.0e+00 1242.6 756 84.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1110.9 753 76.8
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1108.6 753 76.5
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1100.5 747 75.1
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1096.6 747 76.0
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1096.3 750 75.1
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1094.7 748 75.8
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1088.2 748 75.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1086.2 748 74.9
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1085.5 745 75.2
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1084.7 748 74.3
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 756 74.5
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1082.0 750 74.7
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1082.0 758 73.9
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 5.2e-312 1074.7 750 73.9
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 5.2e-312 1074.3 750 74.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 5.2e-312 1073.5 754 74.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 756 73.0
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 4.6e-311 1070.8 750 74.9
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.3e-310 1069.3 750 74.7
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 3.0e-310 1068.1 751 74.2
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 3.3e-309 1064.7 757 72.9
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.4e-309 1063.5 753 73.0
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 756 72.9
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 2.6e-306 1055.0 754 71.8
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 4.5e-306 1054.3 754 72.0
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.7e-305 1052.4 751 71.5
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.9e-305 1051.6 754 71.9
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.8e-305 1051.2 760 72.0
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 6.5e-305 1050.4 748 72.5
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 8.4e-305 1050.0 760 71.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.1e-304 1049.7 758 72.7
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 749 72.9
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 9.3e-304 1046.6 756 71.7
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 756 71.4
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.7e-303 1045.0 757 72.3
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 3.5e-303 1044.6 754 71.6
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 4.6e-303 1044.3 747 71.6
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 7.9e-303 1043.5 748 72.5
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 754 72.9
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 763 71.7
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 765 71.6
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 748 71.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 744 72.0
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 749 72.1
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-300 1036.2 785 69.4
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 8.2e-300 1033.5 793 69.1
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 5.3e-299 1030.8 749 70.5
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.3e-299 1030.8 743 71.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.2e-298 1029.6 758 72.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.5e-298 1029.2 758 72.8
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.0e-298 1028.9 757 71.7
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 2.6e-298 1028.5 753 71.6
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 2.6e-298 1028.5 757 71.6
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 755 71.9
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.0e-297 1026.5 758 72.2
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.0e-297 1026.5 748 70.7
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 748 71.3
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.2e-297 1025.4 752 71.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.1e-296 1023.1 780 68.6
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.4e-296 1022.7 749 69.8
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 9.3e-296 1020.0 747 71.1
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.1e-295 1018.8 753 70.5
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 760 71.7
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 3.5e-295 1018.1 747 70.8
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.3e-294 1016.1 752 69.9
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 2.3e-294 1015.4 749 70.9
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 751 71.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 772 70.3
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 749 70.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 8.7e-294 1013.4 751 70.8
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 4.3e-293 1011.1 751 70.7
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 754 70.7
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 769 68.4
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.6e-292 1009.2 745 71.0
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.5e-290 1001.1 756 69.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.9e-288 995.7 754 68.2
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 4.3e-285 984.6 707 72.3
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 4.3e-285 984.6 744 68.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.3e-283 977.6 708 73.0
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.0e-281 973.4 743 67.8
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 5.0e-281 971.1 656 75.6
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 8.5e-281 970.3 743 66.8
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 9.7e-277 956.8 755 67.8
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.1e-272 943.3 698 69.2
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.9e-272 942.6 707 69.0
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.9e-272 942.6 657 73.5
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 2.5e-272 942.2 746 68.0
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 2.4e-267 925.6 654 73.5
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 5.9e-258 894.4 834 58.4
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.6e-241 837.8 756 57.3
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 4.4e-237 825.1 752 58.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.5e-232 810.1 536 76.1
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.5e-232 807.4 719 60.5
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 7.8e-226 787.7 697 66.1
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.3e-222 776.2 554 72.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 9.9e-221 770.8 501 78.0
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.4e-214 749.6 607 65.1
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-214 749.6 557 70.2
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.7e-191 672.5 517 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.1e-182 644.4 618 55.2
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 6.1e-170 602.1 518 67.6
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.3e-168 596.3 447 68.7
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 5.7e-168 595.5 468 67.5
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.5e-163 580.1 436 70.0
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.3e-153 547.0 436 66.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.2e-137 492.7 421 62.0
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 6.8e-137 492.3 429 57.6
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 6.3e-135 485.7 431 57.1
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.1e-126 456.4 356 65.4
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.6e-125 453.0 356 65.2
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.3e-123 445.7 400 58.8
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.7e-101 374.0 222 83.3
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 4.6e-93 346.7 267 70.0
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 6.0e-93 346.3 238 72.7
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.5e-70 271.2 230 62.2
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 2.6e-64 251.1 160 78.8
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.2e-61 242.3 168 70.2
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.7e-58 231.9 137 85.4
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.2e-54 217.6 141 75.9
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.4e-52 212.2 295 44.1
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 5.7e-51 206.8 156 67.3
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.8e-50 204.5 129 77.5
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 8.5e-47 193.0 229 49.8
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 6.1e-45 186.8 310 42.3
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 6.3e-42 176.8 105 84.8
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 5.3e-41 173.7 97 84.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 3.8e-39 167.5 292 37.7
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 4.7e-37 160.6 132 66.7
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 8.0e-37 159.8 118 69.5
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.4e-36 159.1 81 96.3
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.4e-35 154.1 146 54.8
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.4e-33 149.1 143 53.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.6e-27 128.3 113 62.8
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 3.5e-24 117.9 132 50.0
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 9.5e-22 109.8 116 50.9
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.0e-20 106.3 143 45.5
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 5.7e-19 100.5 71 69.0
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.2e-16 92.8 58 69.0
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 1.0e-15 89.7 53 84.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.3e-15 89.4 58 65.5
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.3e-15 88.6 169 34.9
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 7.3e-14 83.6 125 37.6
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 6.1e-13 80.5 52 75.0
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.8e-12 79.0 73 58.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 4.0e-12 77.8 88 48.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 1.2e-11 76.3 52 71.2
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 7.0e-09 67.0 36 94.4
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 96.6


User provided reference genes

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