Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 0.0e+00 1330.9 942 100.0
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 0.0e+00 1298.5 942 98.1
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 0.0e+00 1246.1 943 94.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 0.0e+00 1158.7 943 89.9
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.6e-292 1009.6 935 80.5
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 2.4e-288 995.7 957 75.2
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 5.2e-288 994.6 932 79.1
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.4e-287 991.5 938 78.7
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.3e-286 989.9 933 79.8
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 2.9e-286 988.8 933 79.2
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 9.3e-285 983.8 934 78.1
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.3e-283 979.2 931 78.2
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.6e-281 973.0 947 77.5
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 2.1e-281 972.6 936 78.7
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 3.6e-281 971.8 931 78.0
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 3.1e-280 968.8 939 77.2
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.5e-279 966.5 943 77.1
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 2.6e-279 965.7 938 78.7
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 3.4e-279 965.3 945 76.4
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 5.8e-279 964.5 938 77.4
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 9.9e-279 963.8 941 75.2
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 3.8e-278 961.8 936 77.0
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 3.8e-278 961.8 983 62.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.4e-277 959.1 930 77.6
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 3.2e-277 958.7 938 66.4
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.5e-274 949.9 949 77.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 3.1e-272 942.2 945 76.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 3.1e-272 942.2 940 67.3
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 4.0e-272 941.8 949 76.9
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 1.3e-270 936.8 1106 67.5
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 3.8e-270 935.3 949 76.8
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 4.9e-270 934.9 949 73.6
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 1.4e-269 933.3 941 75.2
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.7e-267 924.5 937 75.6
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 4.3e-266 921.8 949 76.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 9.6e-266 920.6 945 74.6
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.8e-265 919.1 944 72.5
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 5.3e-264 914.8 951 74.8
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 9.0e-264 914.1 950 74.9
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.5e-263 913.3 933 73.1
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.2e-261 905.6 931 75.2
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.1e-261 904.4 933 75.2
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 1.2e-260 903.7 951 75.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 1.3e-259 900.2 934 74.0
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 1.1e-258 897.1 943 74.5
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 5.7e-258 894.8 950 74.8
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 7.4e-258 894.4 935 74.3
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 8.2e-257 891.0 949 73.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-256 890.6 951 75.0
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 3.1e-256 889.0 990 72.2
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.2e-255 887.1 936 72.4
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.6e-255 885.9 950 69.9
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.4e-255 885.6 947 73.3
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.0e-254 884.0 931 74.1
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.3e-254 883.6 947 73.3
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.2e-254 882.9 933 73.7
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 2.9e-254 882.5 952 63.6
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.9e-254 882.5 948 73.3
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.0e-254 881.7 947 73.4
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.1e-253 880.6 947 73.1
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.2e-253 878.6 938 72.7
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.5e-253 878.2 935 73.9
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 2.7e-252 875.9 942 73.1
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.3e-251 873.6 933 70.5
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 3.9e-251 872.1 934 73.0
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 4.3e-250 868.6 932 73.1
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 1.8e-248 863.2 943 71.4
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.4e-248 862.8 940 70.7
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 2.4e-248 862.8 932 72.9
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.5e-247 860.1 934 70.3
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 2.6e-247 859.4 947 72.2
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 7.7e-247 857.8 935 69.7
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.7e-246 856.7 933 71.5
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.2e-246 856.3 945 64.0
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 5.0e-246 855.1 938 69.8
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.9e-245 853.2 922 72.2
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.8e-243 846.7 941 65.0
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 3.0e-243 845.9 959 59.5
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.9e-243 845.5 952 73.1
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 4.3e-242 842.0 953 69.8
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 6.3e-241 838.2 730 75.9
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.8e-240 836.6 945 69.8
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.4e-240 836.3 969 49.6
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.5e-237 826.2 933 71.1
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 7.2e-237 824.7 933 71.0
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.1e-236 823.2 933 71.9
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 6.1e-236 821.6 933 70.8
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.4e-235 820.5 933 71.5
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.6e-231 807.0 943 70.6
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.6e-231 806.2 935 70.3
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.1e-226 790.8 884 72.5
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.2e-223 780.8 947 69.5
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.2e-223 780.8 953 66.2
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.0e-222 777.7 818 78.5
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.6e-220 769.2 943 69.4
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.8e-217 759.6 944 68.5
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 5.0e-214 748.8 943 65.9
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 2.3e-211 740.0 1011 59.9
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 8.3e-209 731.5 864 71.5
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.2e-207 727.6 942 62.5
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.0e-203 713.0 937 65.0
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 2.7e-191 673.3 922 61.6
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.7e-185 652.9 867 65.7
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 9.2e-184 648.3 943 54.1
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 8.1e-172 608.6 730 63.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 3.6e-164 583.2 942 57.7
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.6e-162 577.0 946 57.3
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.7e-161 574.3 956 55.9
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.7e-161 574.3 956 55.9
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.9e-157 560.8 973 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 3.5e-151 540.0 947 55.8
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.1e-127 461.1 653 45.3
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.3e-118 431.0 588 61.7
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 9.1e-107 392.5 589 42.8
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 7.5e-101 372.9 941 49.1
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 9.8e-101 372.5 292 70.5
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 4.5e-98 363.6 950 43.3
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 6.2e-71 273.5 727 43.5
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.8e-55 221.5 183 62.3
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.7e-44 185.7 181 55.2
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.8e-41 175.6 127 65.4
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 2.5e-40 171.8 125 66.4
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.4e-38 166.0 126 68.3
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.0e-37 162.2 123 61.0
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 9.9e-37 159.8 188 48.4
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.6e-31 142.5 126 57.1
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.0e-25 123.2 84 72.6
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.0e-25 123.2 137 45.3
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 6.7e-25 120.6 77 79.2
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 5.3e-22 110.9 79 69.6
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.5e-19 100.9 82 59.8
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.6e-18 98.2 80 57.5
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 3.0e-17 95.1 86 58.1
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 9.7e-16 90.1 74 52.7
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-14 85.9 103 55.3
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.0e-13 82.4 58 69.0
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.1e-11 76.6 70 58.6
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.6e-10 72.8 52 65.4
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 3.9e-09 68.2 60 63.3
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 2.6e-08 65.5 60 53.3
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 1.1e-06 60.1 159 24.5
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 1.4e-06 59.7 136 25.7
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 1.8e-06 59.3 146 26.0
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 2.4e-06 58.9 116 26.7
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 4.1e-06 58.2 129 27.9
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 4.1e-06 58.2 129 27.9
A09p57830 Brassica napus HOM05D004736 ORTHO05D006424 9.1e-06 57.0 198 26.8
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 9.1e-06 57.0 197 26.4
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 9.1e-06 57.0 197 26.4
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 9.1e-06 57.0 176 26.7
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 9.1e-06 57.0 117 28.2


User provided reference genes

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