Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 2.6e-286 988.0 505 100.0
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 4.8e-272 940.6 505 94.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 8.2e-264 913.3 506 92.5
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.9e-252 875.5 505 88.5
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 2.4e-215 752.3 513 76.6
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.2e-209 733.4 510 75.3
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.0e-209 732.6 510 75.1
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 9.3e-207 723.8 506 76.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 2.1e-206 722.6 510 73.5
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 7.8e-206 720.7 510 74.1
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.9e-205 718.4 490 77.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.8e-203 712.2 458 79.7
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.9e-200 702.2 515 71.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 4.9e-200 701.4 512 72.9
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.5e-198 695.3 508 71.7
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.3e-197 692.6 478 75.7
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.1e-196 690.3 527 70.2
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 9.6e-196 687.2 515 70.3
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.3e-195 686.8 514 71.0
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 8.1e-195 684.1 504 70.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 5.3e-194 681.4 504 71.2
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.5e-193 679.9 515 70.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 7.6e-193 677.6 514 70.4
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.7e-192 676.4 505 69.5
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.2e-192 676.0 509 70.1
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 4.9e-192 674.9 511 71.0
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 8.4e-192 674.1 492 71.5
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.4e-191 672.5 492 71.5
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.4e-191 672.5 492 71.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.4e-191 672.5 505 68.1
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.2e-191 672.2 554 65.3
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 4.2e-191 671.8 492 71.7
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.0e-190 667.9 492 71.1
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 7.9e-190 667.5 506 69.0
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 7.9e-190 667.5 512 69.3
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.3e-189 666.0 480 73.8
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.5e-188 662.5 502 69.7
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.6e-187 659.8 526 67.5
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 4.8e-187 658.3 510 68.4
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.4e-186 656.8 509 69.2
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 6.9e-186 654.4 509 68.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.0e-185 652.9 492 70.7
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.4e-185 652.1 511 68.5
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.3e-184 650.2 509 68.4
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.2e-184 649.4 507 70.2
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 2.2e-184 649.4 494 69.4
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 3.2e-183 645.6 508 67.3
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 3.2e-183 645.6 515 67.4
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 3.2e-183 645.6 538 65.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.6e-182 643.3 510 67.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.1e-182 642.9 509 67.8
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.3e-181 640.2 508 69.3
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.8e-181 639.8 507 67.7
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.3e-181 639.4 512 66.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 5.1e-181 638.3 509 67.8
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 6.7e-181 637.9 514 66.1
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 6.7e-181 637.9 503 68.0
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 8.7e-181 637.5 514 67.7
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 8.7e-181 637.5 507 67.3
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.5e-180 636.7 406 81.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.5e-180 636.7 505 68.1
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.9e-180 636.3 509 67.4
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 4.3e-180 635.2 475 68.0
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.3e-180 635.2 508 66.7
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 9.6e-180 634.0 512 67.8
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 8.2e-179 630.9 448 73.0
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 2.0e-177 626.3 449 72.6
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.5e-177 625.2 445 73.3
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.3e-176 623.6 462 69.7
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.2e-175 618.6 448 72.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.7e-174 615.9 512 63.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.7e-174 615.9 513 65.5
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 6.1e-174 614.8 449 71.0
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 8.7e-173 610.9 410 74.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.3e-172 609.0 485 65.4
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.4e-167 593.6 505 63.8
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.4e-167 593.6 508 64.0
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 4.2e-167 592.0 521 62.0
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 3.6e-166 589.0 512 63.3
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 4.6e-166 588.6 448 69.9
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 6.1e-166 588.2 510 63.1
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 8.8e-165 584.3 374 79.4
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 6.9e-162 574.7 477 63.5
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.5e-161 573.5 450 66.0
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 7.2e-159 564.7 552 56.7
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.1e-158 563.1 512 59.8
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.7e-158 562.8 559 57.4
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.3e-155 553.9 512 61.9
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 8.2e-155 551.2 431 66.4
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 8.2e-155 551.2 501 59.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.8e-149 533.5 421 65.3
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 4.0e-149 532.3 370 75.4
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 8.0e-142 508.1 391 67.8
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.7e-139 500.4 404 62.6
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.5e-135 486.5 504 55.2
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.6e-134 483.8 450 59.1
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 8.8e-133 478.0 478 55.4
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 8.8e-133 478.0 546 50.0
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.5e-132 477.2 434 58.3
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 3.3e-127 459.5 306 73.9
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.0e-121 440.3 404 59.2
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.7e-115 420.6 340 62.6
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.5e-111 406.8 377 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 7.3e-111 405.2 413 54.5
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 2.3e-109 400.2 439 50.1
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.0e-108 397.1 459 50.1
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-107 394.0 403 53.8
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.6e-105 386.0 251 76.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.0e-104 384.8 271 73.1
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.3e-104 384.4 450 50.0
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.4e-98 362.5 359 57.4
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 9.2e-98 361.7 398 48.5
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.8e-84 315.8 332 53.3
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 8.4e-83 312.0 456 42.8
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.4e-74 283.9 275 57.5
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.3e-72 278.1 373 44.2
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 3.9e-64 250.0 479 36.1
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.7e-59 234.6 299 47.2
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 3.0e-56 223.8 530 30.9
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.0e-35 155.6 138 65.2
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.0e-35 155.6 190 48.9
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.2e-35 154.5 123 66.7
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.9e-35 154.1 94 80.9
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-28 132.1 222 39.6
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 3.4e-23 114.0 105 57.1
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.7e-20 104.4 142 50.7
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.5e-20 104.0 216 35.6
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 7.7e-20 102.8 161 44.1
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-16 92.0 89 56.2
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.8e-16 89.4 98 49.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.7e-14 85.1 67 58.2
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.8e-12 76.3 62 69.4
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 3.8e-11 73.9 63 55.6
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 6.6e-11 73.2 133 39.8
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 8.9e-08 62.8 73 50.7
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 7.5e-07 59.7 106 39.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 4.9e-06 57.0 59 52.5


User provided reference genes

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