Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 4.8e-27 123.6 57 100.0
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.7e-24 115.2 56 94.6
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.1e-23 112.5 56 91.1
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 5.5e-23 110.2 56 89.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 7.1e-23 109.8 56 89.3
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 6.7e-21 103.2 57 77.2
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 6.7e-21 103.2 57 77.2
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 6.7e-21 103.2 57 78.9
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 1.9e-20 101.7 57 75.4
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.9e-20 101.7 57 75.4
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.3e-20 100.9 57 75.4
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.3e-20 100.5 57 73.7
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 5.7e-20 100.1 57 73.7
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 7.4e-20 99.8 55 80.0
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 9.7e-20 99.4 55 80.0
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 9.7e-20 99.4 57 73.7
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 9.7e-20 99.4 57 73.7
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 1.6e-19 98.6 57 75.4
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 1.6e-19 98.6 57 71.9
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.6e-19 98.6 57 71.9
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 2.2e-19 98.2 57 75.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 2.2e-19 98.2 55 76.4
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 3.7e-19 97.4 55 72.7
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 3.7e-19 97.4 57 71.9
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 4.8e-19 97.1 55 72.7
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 4.8e-19 97.1 55 78.2
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 4.8e-19 97.1 55 72.7
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.8e-19 97.1 57 70.2
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.8e-19 97.1 57 70.2
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 6.3e-19 96.7 55 70.9
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 6.3e-19 96.7 55 78.2
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 8.2e-19 96.3 57 70.2
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 8.2e-19 96.3 57 70.2
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.1e-18 95.9 55 74.5
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.1e-18 95.9 55 72.7
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.1e-18 95.9 57 71.9
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 1.1e-18 95.9 57 70.2
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.8e-18 95.1 57 71.9
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.8e-18 95.1 55 72.7
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-18 95.1 55 70.9
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.8e-18 95.1 57 71.9
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.8e-18 95.1 55 74.5
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.8e-18 95.1 55 70.9
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.4e-18 94.7 55 74.5
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.4e-18 94.7 55 74.5
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.4e-18 94.7 55 72.7
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.4e-18 94.7 55 72.7
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 2.4e-18 94.7 57 70.2
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.4e-18 94.7 57 70.2
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 3.1e-18 94.4 55 70.9
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 4.1e-18 94.0 57 66.7
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 5.3e-18 93.6 55 72.7
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 5.3e-18 93.6 55 72.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 5.3e-18 93.6 55 72.7
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 5.3e-18 93.6 57 66.7
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 5.3e-18 93.6 57 68.4
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 5.3e-18 93.6 57 70.2
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 5.3e-18 93.6 57 70.2
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 6.9e-18 93.2 55 67.3
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 6.9e-18 93.2 57 68.4
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 6.9e-18 93.2 57 70.2
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 6.9e-18 93.2 55 69.1
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 9.0e-18 92.8 57 68.4
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 9.0e-18 92.8 57 70.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 9.0e-18 92.8 55 70.9
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 9.0e-18 92.8 55 69.1
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.2e-17 92.4 57 70.2
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.2e-17 92.4 57 70.2
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.2e-17 92.4 57 70.2
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 2.0e-17 91.7 57 68.4
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 2.0e-17 91.7 57 66.7
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 2.0e-17 91.7 57 64.9
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.0e-17 91.7 57 70.2
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 2.0e-17 91.7 55 69.1
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 2.6e-17 91.3 55 67.3
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 3.4e-17 90.9 57 64.9
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 3.4e-17 90.9 57 64.9
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.4e-17 90.9 57 64.9
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.4e-17 90.9 57 64.9
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.4e-17 90.9 57 64.9
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 4.5e-17 90.5 57 68.4
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 4.5e-17 90.5 55 70.9
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 4.5e-17 90.5 57 63.2
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 5.9e-17 90.1 55 67.3
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 7.6e-17 89.7 56 64.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.0e-16 89.4 55 67.3
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 1.3e-16 89.0 57 63.2
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.7e-16 88.6 57 66.7
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.7e-16 88.6 57 66.7
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.7e-16 88.6 57 66.7
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.7e-16 88.6 57 66.7
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.7e-16 88.6 57 66.7
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 2.2e-16 88.2 57 64.9
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 2.9e-16 87.8 57 64.9
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.9e-16 87.8 57 63.2
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 3.8e-16 87.4 56 62.5
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.9e-15 85.1 57 61.4
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 1.9e-15 85.1 57 63.2
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.9e-15 85.1 57 57.9
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 9.3e-15 82.8 57 57.9
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.6e-14 82.0 52 59.6
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 1.0e-13 79.3 55 61.8
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 1.0e-13 79.3 55 61.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.8e-13 78.6 55 58.2
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 6.7e-13 76.6 50 66.0
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 1.1e-12 75.9 56 55.4
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.5e-12 74.7 56 50.0
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 4.1e-10 67.4 34 76.5
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 8.5e-08 59.7 51 51.0


User provided reference genes

Program Settings