Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G018780 Cucumis sativus L. HOM05D000631 ORTHO05D024832 9.7e-65 250.0 125 100.0
CsaV3_5G017090 Cucumis sativus L. HOM05D000631 ORTHO05D024832 4.5e-38 161.4 88 90.9
CsaV3_6G041270 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.7e-29 132.9 97 70.1
MELO3C024602.2 Cucumis melo HOM05D000631 ORTHO05D000524 2.1e-27 125.9 66 89.4
Sed0010864 Sechium edule HOM05D000631 ORTHO05D000524 1.3e-24 116.7 97 61.9
ClCG01G015160 Citrullus lanatus HOM05D000631 ORTHO05D000524 1.4e-18 96.7 53 84.9
CsaV3_6G021440 Cucumis sativus L. HOM05D000631 ORTHO05D024832 6.8e-18 94.4 79 65.8
C02p63040 Brassica napus HOM05D000631 ORTHO05D000524 1.1e-12 77.0 99 49.5
BolC2t12377H Brassica oleracea HOM05D000631 ORTHO05D000524 1.1e-12 77.0 99 49.5
BraA02t09228Z Brassica rapa HOM05D000631 ORTHO05D000524 4.3e-12 75.1 99 48.5
QL10p042374 Quercus lobata HOM05D000631 ORTHO05D000524 5.6e-12 74.7 111 40.5
arahy.Tifrunner.gnm1.ann1.0XMI5T Arachis hypogaea HOM05D000631 ORTHO05D000524 7.3e-12 74.3 122 41.8
BcaC03g18234 Brassica carinata HOM05D000631 ORTHO05D000524 7.3e-12 74.3 98 48.0
arahy.Tifrunner.gnm1.ann1.44VHKN Arachis hypogaea HOM05D000631 ORTHO05D000524 9.5e-12 73.9 122 41.0
CiPaw.04G080600 Carya illinoinensis HOM05D000631 ORTHO05D000524 1.2e-11 73.6 75 52.0
Sp2g27040 Schrenkiella parvula HOM05D000631 ORTHO05D000524 2.1e-11 72.8 57 64.9
AT5G63970 Arabidopsis thaliana HOM05D000631 ORTHO05D000524 2.8e-11 72.4 57 64.9
A02p43070 Brassica napus HOM05D000631 ORTHO05D000524 3.6e-11 72.0 99 46.5
Lj4C833T6 Lonicera japonica HOM05D000631 ORTHO05D000524 3.6e-11 72.0 76 48.7
Solyc09g065870.4 Solanum lycopersicum HOM05D000631 ORTHO05D000524 8.1e-11 70.9 73 52.1
Sopen09g027660 Solanum pennellii HOM05D000631 ORTHO05D000524 8.1e-11 70.9 73 52.1
Atru.chr4.963 Acer truncatum HOM05D000631 ORTHO05D000524 1.4e-10 70.1 75 50.7
arahy.Tifrunner.gnm1.ann1.D38J11 Arachis hypogaea HOM05D000631 ORTHO05D000524 2.3e-10 69.3 100 45.0
arahy.Tifrunner.gnm1.ann1.PK90TP Arachis hypogaea HOM05D000631 ORTHO05D000524 2.3e-10 69.3 100 45.0
A06p30590 Brassica napus HOM05D000631 ORTHO05D000524 2.3e-10 69.3 57 61.4
BraA06t26011Z Brassica rapa HOM05D000631 ORTHO05D000524 2.3e-10 69.3 57 61.4
PGSC0003DMG400019332 Solanum tuberosum HOM05D000631 ORTHO05D000524 2.3e-10 69.3 73 50.7
TPR.G28189 Trifolium pratense HOM05D000631 ORTHO05D000524 2.3e-10 69.3 74 50.0
TWI79G0774 Tripterygium wilfordii HOM05D000631 ORTHO05D000524 2.3e-10 69.3 64 53.1
MSTRG.23470 Avicennia marina HOM05D000631 ORTHO05D000524 3.1e-10 68.9 85 47.1
CAN.G1259.3 Capsicum annuum HOM05D000631 ORTHO05D000524 3.1e-10 68.9 87 44.8
Lalb_Chr23g0272631 Lupinus albus HOM05D000631 ORTHO05D000524 3.1e-10 68.9 100 41.0
Glyma.04G211000 Glycine max HOM05D000631 ORTHO05D000524 4.0e-10 68.6 79 49.4
RcHm_v2.0_Chr2g0122151 Rosa chinensis HOM05D000631 ORTHO05D000524 4.0e-10 68.6 121 38.8
AL8G41230 Arabidopsis lyrata HOM05D000631 ORTHO05D000524 5.2e-10 68.2 57 61.4
Nitab4.5_0000187g0190 Nicotiana tabacum HOM05D000631 ORTHO05D000524 6.8e-10 67.8 72 50.0
Potri.007G103700 Populus trichocarpa HOM05D000631 ORTHO05D000524 6.8e-10 67.8 101 42.6
Sabra07G0085000 Salix brachista HOM05D000631 ORTHO05D000524 8.9e-10 67.4 100 42.0
Carub.0008s2475 Capsella rubella HOM05D000631 ORTHO05D000524 1.2e-09 67.0 57 59.6
Ca_16975_v3 Cicer arietinum L. HOM05D000631 ORTHO05D000524 1.2e-09 67.0 78 44.9
MBI06_g32177_MAGBIO Magnolia biondii HOM05D000631 ORTHO05D000524 1.2e-09 67.0 114 37.7
Dinv34361 Davidia involucrata HOM05D000631 ORTHO05D000524 1.5e-09 66.6 75 46.7
Nitab4.5_0001556g0110 Nicotiana tabacum HOM05D000631 ORTHO05D000524 1.5e-09 66.6 100 40.0
TAR381G0655 Trochodendron aralioides HOM05D000631 ORTHO05D000524 1.5e-09 66.6 106 37.7
Thecc.01G136000 Theobroma cacao HOM05D000631 ORTHO05D000524 2.0e-09 66.2 113 45.1
Dinv10219 Davidia involucrata HOM05D000631 ORTHO05D000524 2.6e-09 65.9 85 45.9
Glyma.06G155132 Glycine max HOM05D000631 ORTHO05D000524 2.6e-09 65.9 107 42.1
VMungo1309G2362 Vigna mungo HOM05D000631 ORTHO05D000524 2.6e-09 65.9 75 48.0
C03p62370 Brassica napus HOM05D000631 ORTHO05D000524 3.4e-09 65.5 56 60.7
BolC3t18497H Brassica oleracea HOM05D000631 ORTHO05D000524 3.4e-09 65.5 56 60.7
CARHR277880 Cardamine hirsuta HOM05D000631 ORTHO05D024832 3.4e-09 65.5 53 58.5
Migut.H00868 Erythranthe guttata HOM05D000631 ORTHO05D000524 3.4e-09 65.5 61 55.7
Thhalv10004448m.g Eutrema salsugineum HOM05D000631 ORTHO05D000524 3.4e-09 65.5 107 43.0
Hma1.2p1_0197F.1_g085140 Hydrangea macrophylla HOM05D000631 ORTHO05D000524 3.4e-09 65.5 104 36.5
Aqoxy5G02299 Aquilegia oxysepala HOM05D000631 ORTHO05D000524 4.4e-09 65.1 105 41.0
FvH4_1g24670 Fragaria vesca HOM05D000631 ORTHO05D000524 5.8e-09 64.7 121 38.8
FAN19G2279 Fragaria x ananassa HOM05D000631 ORTHO05D000524 5.8e-09 64.7 121 38.8
FAN23G2008 Fragaria x ananassa HOM05D000631 ORTHO05D000524 5.8e-09 64.7 121 38.8
Medtr3g096520 Medicago truncatula HOM05D000631 ORTHO05D000524 5.8e-09 64.7 117 36.8
FAN26G3225 Fragaria x ananassa HOM05D000631 ORTHO05D000524 7.5e-09 64.3 122 39.3
FAN28G2480 Fragaria x ananassa HOM05D000631 ORTHO05D000524 7.5e-09 64.3 112 41.1
Glyma.05G193500 Glycine max HOM05D000631 ORTHO05D000524 7.5e-09 64.3 56 62.5
Lalb_Chr13g0296681 Lupinus albus HOM05D000631 ORTHO05D000524 7.5e-09 64.3 102 40.2
Nn033s41619 Nelumbo nucifera HOM05D000631 ORTHO05D000524 7.5e-09 64.3 123 35.0
Nn5g28480 Nelumbo nucifera HOM05D000631 ORTHO05D000524 7.5e-09 64.3 123 35.0
Ciclev10001203m.g Citrus clementina HOM05D000631 ORTHO05D000524 9.9e-09 63.9 63 52.4
CANSAT01G0236 Cannabis sativa HOM05D000631 ORTHO05D000524 1.3e-08 63.5 108 38.9
Phvul.009G155300 Phaseolus vulgaris HOM05D000631 ORTHO05D000524 1.3e-08 63.5 117 38.5
HPP92_016132 Vanilla planifolia HOM05D000631 ORTHO05D000524 1.3e-08 63.5 67 46.3
Lj1g0004250 Lotus japonicus HOM05D000631 ORTHO05D000524 1.7e-08 63.2 65 52.3
Sabra05G0054300 Salix brachista HOM05D000631 ORTHO05D000524 1.7e-08 63.2 61 50.8
Psat5g060800 Pisum sativum HOM05D000631 ORTHO05D000524 2.2e-08 62.8 116 37.1
CiPaw.03G119400 Carya illinoinensis HOM05D000631 ORTHO05D000524 4.9e-08 61.6 98 37.8
Phvul.002G273900 Phaseolus vulgaris HOM05D000631 ORTHO05D000524 4.9e-08 61.6 53 56.6
PGR119G0839 Punica granatum HOM05D000631 ORTHO05D000524 4.9e-08 61.6 114 35.1
unitig_699.g19724 Utricularia gibba HOM05D000631 ORTHO05D000524 4.9e-08 61.6 57 52.6
CSS0038228 Camellia sinensis var. sinensis HOM05D000631 ORTHO05D000524 6.4e-08 61.2 64 48.4
Haze_25287 Corylus avellana HOM05D000631 ORTHO05D000524 6.4e-08 61.2 115 37.4
TWI31G0103 Tripterygium wilfordii HOM05D000631 ORTHO05D000524 6.4e-08 61.2 106 39.6
VMungo0251G0017 Vigna mungo HOM05D000631 ORTHO05D000524 6.4e-08 61.2 114 35.1
GSVIVG01026456001 Vitis vinifera HOM05D000631 ORTHO05D000524 1.1e-07 60.5 117 30.8
Cc07_g18890 Coffea canephora HOM05D000631 ORTHO05D000524 1.4e-07 60.1 77 42.9
Eucgr.I00183 Eucalyptus grandis HOM05D000631 ORTHO05D000524 1.4e-07 60.1 103 35.9
Lalb_Chr07g0184311 Lupinus albus HOM05D000631 ORTHO05D000524 1.4e-07 60.1 118 35.6
SGA_v2.0_scaffold20G08984 Striga asiatica HOM05D000631 ORTHO05D000524 1.9e-07 59.7 64 48.4
vmacro12783 Vaccinium macrocarpon HOM05D000631 ORTHO05D000524 1.9e-07 59.7 61 50.8
Rhsim10G0131900 Rhododendron simsii HOM05D000631 ORTHO05D000524 2.4e-07 59.3 75 45.3
Aa31LG1G17930 Aethionema arabicum HOM05D000631 ORTHO05D000524 4.1e-07 58.5 85 40.0
Ah.06g190890 Amaranthus hybridus HOM05D000631 ORTHO05D000524 5.4e-07 58.2 88 40.9
Oeu037836.1 Olea europaea HOM05D000631 ORTHO05D000524 5.4e-07 58.2 56 55.4
SEGI_25487 Sequoiadendron giganteum HOM05D000631 ORTHO05D000524 5.4e-07 58.2 101 36.6
Actinidia06607 Actinidia chinensis HOM05D000631 ORTHO05D000524 9.2e-07 57.4 62 53.2
Gohir.A12G086000 Gossypium hirsutum HOM05D000631 ORTHO05D000524 1.2e-06 57.0 63 50.8
Gohir.D12G084400 Gossypium hirsutum HOM05D000631 ORTHO05D000524 1.2e-06 57.0 63 49.2
Gorai.008G094400 Gossypium raimondii HOM05D000631 ORTHO05D000524 1.2e-06 57.0 63 49.2
EL10Ac4g09603 Beta vulgaris HOM05D000631 ORTHO05D000524 1.6e-06 56.6 65 46.2
Hund07252 Selenicereus undatus HOM05D000631 ORTHO05D000524 1.6e-06 56.6 114 33.3
Os01g0960500 Oryza sativa ssp. japonica HOM05D000631 ORTHO05D000524 2.7e-06 55.8 54 50.0
Cfa002920 Carpinus fangiana HOM05D000631 ORTHO05D000524 3.5e-06 55.5 105 36.2
Actinidia20066 Actinidia chinensis HOM05D000631 ORTHO05D000524 4.6e-06 55.1 52 53.8
Nn1g08926 Nelumbo nucifera HOM05D000631 ORTHO05D000524 4.6e-06 55.1 117 35.0
Zm00001eb362520 Zea mays HOM05D000631 ORTHO05D000524 4.6e-06 55.1 57 50.9


User provided reference genes

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