Gene: Ah.06g190890
General Information
Structural Information
- Species Amaranthus hybridus
- Gene Identifier Ah.06g190890
- Transcript Identifier Ah.06g190890-v1.1.a1
- Gene Type Coding gene
- Location AmaHy_arrow1_Scaffold_6 : 18335375-18345387 : positive
Gene Family Information
- ID HOM05D000631
- #Genes/#Species 901/98
- Phylogenetic origin
- ID ORTHO05D000524
- #Genes/#Species 814/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Ah.06g190890-v1.1.a1
Descriptions
- Description E3 ubiquitin-protein ligase RGLG3 (EC 2.3.2.27) (RING domain ligase 3)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009611 | ISO | PLAZA Integrative Orthology | response to wounding | AT1G79380 |
| GO:0009867 | ISO | PLAZA Integrative Orthology | jasmonic acid mediated signaling pathway | AT1G79380 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT1G79380 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT1G79380 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G79380 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G79380 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G79380 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR010734 | Copine, C-terminal |
| IPR009072 | Histone-fold |
| IPR036465 | von Willebrand factor A-like domain superfamily |
| IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR002035 | von Willebrand factor, type A |
| Mapman id | Description |
|---|---|
| 15.5.49.2 | RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB |
| 19.2.2.1.4.3.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase |
| 19.2.2.1.5.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).polyubiquitination.ligating E3 protein (RGLG) |