Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 2099.3 1069 100.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 2038.8 1069 97.0
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1911.3 1096 90.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1896.3 1071 90.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1639.8 1072 76.2
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1635.9 1072 75.8
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1625.5 1073 75.4
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1624.4 1075 75.7
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1617.8 1075 75.9
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1615.1 1069 75.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1079 75.4
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1613.6 1073 74.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1612.8 1078 75.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1612.4 1002 78.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1603.2 1073 74.1
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1602.0 1072 74.6
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1592.8 1075 74.0
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1085 73.6
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1583.5 1072 73.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1581.6 1072 74.0
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1578.1 1115 72.5
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1575.8 1072 73.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1568.1 1072 73.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1073 72.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1072 73.5
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1069 72.6
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1076 72.4
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1553.5 1072 73.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1074 72.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 1074 72.3
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1548.5 1000 75.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1541.6 1072 71.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1074 71.1
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1539.6 1002 75.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1535.4 1075 71.4
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1533.1 1077 71.0
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1529.6 1092 71.3
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1528.1 1074 71.7
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1523.5 1079 71.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1523.1 1079 71.1
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1513.4 1072 70.9
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1510.0 1070 70.1
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1509.6 1080 70.9
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 1075 70.1
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 1085 69.4
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 1072 70.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1082 69.7
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1500.7 1088 69.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1494.9 1072 71.0
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1493.8 1076 70.6
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1489.2 1072 69.3
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1072 69.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1483.4 1073 69.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1483.0 948 76.7
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1481.5 1073 69.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1479.9 971 74.9
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1476.1 1076 69.3
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1473.4 1077 69.4
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1464.1 1119 67.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1463.0 1161 64.9
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1461.4 1149 65.7
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1461.0 1095 67.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1458.0 1078 68.8
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1445.6 998 72.3
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1445.6 1071 69.3
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1437.2 947 74.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1426.0 988 71.0
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1421.8 1224 61.8
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1418.3 946 75.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1411.7 1069 67.1
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1400.2 965 72.3
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1395.9 1013 68.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1394.0 1097 65.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1377.1 980 69.9
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1374.8 1051 66.6
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1337.0 978 67.4
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1303.1 868 74.8
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1265.4 1091 61.6
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1258.8 1000 62.9
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1257.3 889 71.5
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1256.9 1192 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1252.3 1025 61.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1214.5 1073 58.5
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1210.7 1123 57.9
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1183.7 969 64.0
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1141.3 1006 56.3
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1087.4 1136 52.7
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.4e-305 1052.4 662 78.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.8e-301 1038.9 1012 54.0
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.4e-292 1010.0 751 65.9
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 4.3e-286 988.4 1100 51.2
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 6.2e-285 984.6 1021 51.1
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 8.0e-285 984.2 1041 49.8
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 2.0e-283 979.5 1002 53.1
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 3.5e-256 889.0 595 75.1
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 4.0e-252 875.5 620 71.0
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 6.7e-215 751.9 500 76.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 3.1e-212 743.0 584 62.5
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.7e-194 684.1 518 67.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 6.1e-192 675.6 472 69.5
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.7e-186 657.5 619 56.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.5e-182 644.4 813 48.6
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.4e-174 616.7 460 67.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.0e-171 607.4 381 80.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 5.8e-166 589.3 624 55.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 7.0e-164 582.4 410 69.3
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.9e-157 560.5 397 69.0
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.1e-144 517.7 353 76.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.5e-129 468.4 311 77.8
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.6e-126 457.6 328 69.2
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 4.2e-124 450.3 341 71.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 9.3e-124 449.1 392 60.2
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.3e-121 440.7 285 75.1
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.1e-111 409.1 294 68.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.6e-107 394.0 343 64.7
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.9e-102 376.7 211 85.3
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.3e-96 356.7 241 72.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.2e-81 309.3 292 51.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.7e-80 304.3 224 72.8
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.8e-59 235.0 176 72.7
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 4.0e-50 204.5 185 56.8
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 4.0e-50 204.5 146 68.5
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 4.9e-48 197.6 186 60.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.8e-43 181.8 150 60.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.5e-38 164.9 112 67.9
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 2.5e-36 158.7 136 61.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 9.6e-36 156.8 109 69.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.1e-34 151.8 125 58.4
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.9e-34 150.2 130 55.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 2.4e-31 142.1 128 57.0
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.3e-29 136.3 90 66.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.3e-29 135.6 112 57.1
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.1e-29 134.4 125 63.2
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.1e-29 134.4 125 63.2
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.9e-28 132.5 94 68.1
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.9e-28 132.5 203 37.9
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-26 126.3 92 64.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.4e-23 115.5 192 38.5
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-21 109.0 99 52.5
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.5e-20 106.3 73 68.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.3e-20 104.8 73 67.1
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.2e-19 100.9 69 71.0
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-18 99.4 67 68.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.0e-17 95.9 132 41.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 9.6e-12 77.0 109 45.0
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 1.6e-11 76.3 54 66.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.5e-09 69.7 55 58.2
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 2.6e-09 68.9 60 63.3
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 6.5e-08 64.3 45 66.7
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.9e-07 62.8 37 73.0
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 44 65.9
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 44 65.9
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 44 65.9
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 4.2e-07 61.6 44 65.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 7.1e-07 60.8 35 74.3
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.6e-06 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 3.5e-06 58.5 44 61.4
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 4.6e-06 58.2 45 55.6
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 6.0e-06 57.8 61 47.5


User provided reference genes

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