Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1899.8 937 100.0
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1790.8 938 94.1
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 0.0e+00 1401.3 942 77.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 0.0e+00 1235.3 681 89.4
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1128.6 949 60.9
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1122.1 967 61.0
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1114.8 957 60.6
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1102.0 970 59.0
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1098.2 987 58.0
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1097.4 990 58.1
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1095.1 1002 57.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1093.2 946 59.0
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1090.9 956 59.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1090.1 904 61.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1087.4 1004 57.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1083.2 949 59.3
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1082.0 964 58.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1077.0 990 57.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1076.6 1013 56.4
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1076.6 1027 56.8
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.3e-310 1069.7 970 57.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.3e-310 1067.4 973 58.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.0e-308 1062.4 903 60.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.6e-305 1052.7 955 56.6
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-305 1052.4 956 58.2
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.2e-303 1046.6 967 55.1
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.5e-300 1034.6 942 57.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 8.0e-297 1023.8 954 56.3
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.8e-296 1022.7 986 54.4
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-295 1019.2 972 56.0
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.2e-294 1015.8 985 54.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.0e-292 1007.7 949 56.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.0e-291 1006.9 974 54.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.0e-291 1005.4 946 55.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 3.0e-291 1005.4 956 55.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.9e-291 1005.0 742 65.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.3e-290 1000.7 943 56.6
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 4.0e-288 995.0 926 56.6
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 8.9e-288 993.8 957 53.5
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 4.4e-287 991.5 948 53.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 5.8e-287 991.1 984 54.1
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 9.8e-287 990.3 967 53.4
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 2.4e-285 985.7 973 54.9
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 2.4e-285 985.7 990 53.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 9.2e-285 983.8 954 54.8
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.6e-284 983.0 969 53.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 3.5e-284 981.9 956 54.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 7.8e-284 980.7 962 55.4
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.9e-283 978.4 954 54.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.1e-283 978.0 964 52.9
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 5.2e-280 968.0 958 52.9
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 9.9e-279 963.8 945 54.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 8.3e-278 960.7 950 54.9
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.6e-276 956.4 978 52.4
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.8e-276 954.1 996 51.3
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.3e-275 952.6 955 52.9
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 3.9e-275 951.8 906 54.3
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 5.1e-275 951.4 752 62.6
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.6e-273 946.4 1002 50.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 7.6e-271 937.6 942 52.7
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.3e-267 926.0 954 52.6
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.5e-266 922.5 940 52.1
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 4.3e-266 921.8 944 53.0
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.3e-266 921.8 978 50.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.9e-264 914.4 976 51.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-263 912.9 1009 49.9
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.2e-262 909.4 941 51.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.4e-262 907.9 997 50.8
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 5.4e-261 904.8 975 51.1
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.6e-260 903.3 952 51.8
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.6e-260 901.7 923 52.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.0e-259 900.6 969 51.1
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.3e-259 899.4 972 48.8
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 3.9e-259 898.7 952 51.8
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.3e-258 895.6 959 49.7
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 6.2e-257 891.3 980 49.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 2.4e-256 889.4 952 50.6
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 4.5e-255 885.2 1008 49.0
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 3.2e-253 879.0 813 57.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 6.7e-251 871.3 966 49.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.7e-246 856.7 898 51.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.0e-243 847.4 932 51.5
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.1e-243 845.1 989 48.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.3e-242 842.0 954 47.6
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 8.5e-230 801.2 696 59.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 3.7e-217 759.2 741 55.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.3e-217 758.4 526 69.0
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 8.5e-214 748.0 566 63.4
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.1e-212 743.4 942 45.5
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 9.7e-210 734.6 459 75.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 7.7e-207 724.9 977 44.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-204 717.6 744 53.2
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 7.5e-202 708.4 553 62.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.4e-200 704.1 796 49.4
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.0e-198 695.7 480 71.5
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.7e-191 673.3 1023 39.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 7.5e-186 655.2 1143 37.5
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-183 647.1 948 39.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 6.6e-182 642.1 808 43.8
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-163 581.3 713 44.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 6.8e-163 578.9 606 51.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-162 577.8 793 41.7
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 2.6e-162 577.0 1008 38.3
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.9e-153 546.2 739 43.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-144 518.1 440 59.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-144 518.1 440 59.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.1e-142 509.6 961 34.9
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 8.1e-140 502.3 313 74.8
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-136 491.9 475 51.4
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.1e-133 481.9 278 79.9
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-129 468.8 648 41.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.4e-122 443.7 361 61.2
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-120 436.8 612 41.8
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.3e-116 425.2 617 42.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.8e-107 394.8 485 47.6
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.8e-102 378.3 251 77.3
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-99 368.6 740 34.1
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.9e-98 363.2 315 60.3
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-95 355.5 760 34.3
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 9.7e-93 345.9 457 44.9
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-90 337.8 888 31.3
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 4.7e-87 327.0 450 42.7
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 8.3e-84 316.2 401 46.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.0e-81 309.3 419 40.6
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.3e-78 298.1 639 33.5
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 8.3e-76 289.7 399 42.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.0e-70 272.7 160 75.0
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 7.3e-64 250.0 270 46.7
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.9e-60 238.0 139 77.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.0e-54 217.6 191 53.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 7.5e-53 213.4 717 28.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 6.4e-52 210.3 407 37.6
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-46 192.2 159 54.1
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.3e-46 191.8 164 61.0
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.7e-44 185.7 109 78.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 6.4e-44 183.7 171 57.3
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 8.4e-44 183.3 544 30.0
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.7e-41 175.6 111 74.8
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 6.2e-39 167.2 393 29.5
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 4.0e-38 164.5 106 73.6
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.6e-37 161.8 146 55.5
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-32 145.6 644 25.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.3e-31 142.9 261 36.0
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.8e-30 139.0 89 70.8
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 5.4e-27 127.5 84 72.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 5.1e-25 120.9 86 64.0
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 5.6e-24 117.5 134 45.5
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 7.4e-24 117.1 83 73.5
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 8.4e-20 103.6 84 59.5
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.6e-18 99.4 107 43.0
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.8e-17 95.9 171 41.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.0e-14 84.7 58 62.1
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 2.0e-13 82.4 100 47.0
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 5.1e-09 67.8 78 48.7
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 6.7e-09 67.4 100 40.0
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-07 62.4 71 46.5


User provided reference genes

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