Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 2.7e-62 241.9 127 100.0
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 3.6e-59 231.5 127 94.5
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 5.2e-50 201.1 127 84.3
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 3.8e-48 194.9 127 81.9
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 2.3e-37 159.1 117 71.8
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.1e-36 156.8 120 69.2
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.5e-36 156.4 122 68.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.1e-35 152.5 117 71.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 4.8e-35 151.4 118 66.9
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 4.8e-35 151.4 120 67.5
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 8.1e-35 150.6 118 68.6
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 1.1e-34 150.2 116 68.1
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.4e-34 149.8 120 66.7
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 3.1e-34 148.7 116 68.1
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 6.9e-34 147.5 128 63.3
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 9.0e-34 147.1 123 65.0
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.2e-33 146.7 130 63.1
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.2e-33 146.7 118 66.1
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 4.5e-33 144.8 113 67.3
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 7.6e-33 144.1 118 66.1
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 7.6e-33 144.1 120 65.8
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.3e-32 143.3 118 66.9
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.7e-32 142.9 120 65.8
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.7e-32 142.9 118 64.4
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.2e-32 142.5 129 62.8
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 2.2e-32 142.5 118 66.1
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.9e-32 142.1 122 64.8
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 2.9e-32 142.1 119 63.9
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.1e-31 140.2 118 66.1
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.1e-31 140.2 120 67.5
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 3.2e-31 138.7 118 61.9
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 9.3e-31 137.1 113 66.4
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 1.6e-30 136.3 114 61.4
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 2.1e-30 136.0 122 60.7
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 2.7e-30 135.6 119 60.5
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 3.5e-30 135.2 121 60.3
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.0e-30 134.4 120 65.0
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.0e-29 133.7 125 59.2
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 3.9e-29 131.7 127 58.3
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 6.7e-29 131.0 114 64.0
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.5e-28 129.8 113 60.2
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.9e-28 129.4 114 61.4
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 5.6e-28 127.9 118 60.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 7.4e-28 127.5 119 62.2
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 9.6e-28 127.1 128 53.9
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 1.6e-27 126.3 126 57.9
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.1e-27 125.9 116 59.5
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 2.1e-27 125.9 119 60.5
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 2.1e-27 125.9 113 59.3
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.8e-27 124.8 116 60.3
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 6.2e-27 124.4 113 63.7
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 6.2e-27 124.4 105 64.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.2e-27 124.0 127 54.3
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.2e-27 124.0 127 54.3
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.1e-26 123.6 105 63.8
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.4e-26 123.2 126 54.8
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 3.1e-26 122.1 125 56.8
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 9.0e-26 120.6 115 59.1
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.2e-25 120.2 123 58.5
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 1.2e-25 120.2 116 58.6
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.0e-25 119.4 126 52.4
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.5e-25 118.2 115 58.3
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 4.5e-25 118.2 120 55.8
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.3e-24 116.7 117 55.6
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.3e-24 116.7 118 57.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 117 55.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.9e-24 115.5 116 55.2
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 3.8e-24 115.2 125 56.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.8e-24 115.2 124 52.4
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.4e-24 114.0 117 54.7
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.1e-23 113.6 120 55.0
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.1e-23 113.6 124 52.4
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 1.9e-23 112.8 118 55.9
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.9e-23 112.8 116 56.9
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 2.5e-23 112.5 125 52.0
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 9.3e-23 110.5 116 54.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 9.3e-23 110.5 116 54.3
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 1.0e-21 107.1 118 53.4
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 5.1e-21 104.8 119 49.6
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 6.7e-21 104.4 172 40.7
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.9e-20 102.8 119 49.6
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 2.5e-20 102.4 81 64.2
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 3.3e-20 102.1 119 48.7
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 4.3e-20 101.7 120 52.5
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 4.3e-20 101.7 120 52.5
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 5.7e-20 101.3 125 50.4
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 1.3e-19 100.1 81 63.0
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.3e-19 100.1 113 51.3
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.3e-19 100.1 105 53.3
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 3.7e-19 98.6 120 51.7
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 4.8e-19 98.2 113 50.4
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 1.4e-18 96.7 113 50.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.4e-18 96.7 128 47.7
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 1.4e-18 96.7 113 50.4
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 1.4e-18 96.7 113 50.4
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 4.1e-18 95.1 118 46.6
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 5.3e-18 94.7 66 71.2
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 6.9e-18 94.4 119 48.7
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.6e-17 92.4 109 51.4
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 3.4e-17 92.0 112 48.2
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 1.4e-15 86.7 108 48.1
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 2.5e-15 85.9 83 59.0
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 5.5e-15 84.7 120 45.8
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 5.5e-15 84.7 112 45.5
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.2e-14 83.6 106 47.2
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 3.6e-14 82.0 85 57.6
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 6.1e-14 81.3 113 46.0
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.4e-13 80.1 82 57.3
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.1e-13 78.2 113 43.4
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.1e-13 78.2 113 43.4
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 4.3e-12 75.1 126 40.5
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 5.0e-08 61.6 155 32.9
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 6.5e-08 61.2 39 74.4
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 8.5e-08 60.8 53 49.1
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 8.5e-08 60.8 86 50.0
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 3.2e-07 58.9 52 51.9
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 5.5e-07 58.2 51 51.0
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 9.4e-07 57.4 27 88.9
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.6e-06 56.6 52 50.0
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.6e-06 56.6 52 50.0
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.6e-06 56.6 52 50.0
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 1.6e-06 56.6 51 51.0
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.6e-06 56.6 52 50.0
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 1.6e-06 56.6 64 42.2
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 2.1e-06 56.2 51 49.0
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 2.1e-06 56.2 52 50.0
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 2.1e-06 56.2 51 49.0
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.7e-06 55.8 51 49.0
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 2.7e-06 55.8 49 49.0
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 2.7e-06 55.8 52 50.0
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 3.6e-06 55.5 51 47.1
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 3.6e-06 55.5 51 47.1
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 3.6e-06 55.5 51 49.0
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 3.6e-06 55.5 51 49.0
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 4.7e-06 55.1 52 50.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.7e-06 55.1 53 52.8
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.7e-06 55.1 51 47.1
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 4.7e-06 55.1 51 49.0
AagrBONN_evm.TU.Sc2ySwM_228.1178 Anthoceros agrestis HOM05D005384 ORTHO05D006477 6.1e-06 54.7 64 40.6
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 6.1e-06 54.7 52 50.0
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.1e-06 54.7 51 52.9
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 47.1
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 49.0
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 47.1
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 47.1
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 47.1
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 49.0
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 49.0
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.1e-06 54.7 51 54.9
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 6.1e-06 54.7 51 47.1
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 7.9e-06 54.3 51 52.9
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 49.0
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 47.1
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 47.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.9e-06 54.3 51 52.9
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 49.0


User provided reference genes

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