Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 0.0e+00 1596.6 829 100.0
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 0.0e+00 1453.7 830 91.7
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 0.0e+00 1390.2 829 87.3
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 0.0e+00 1327.0 830 81.8
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 8.2e-277 957.2 780 62.2
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 6.7e-271 937.6 794 59.3
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.6e-267 925.6 816 61.0
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 3.4e-267 925.2 788 59.4
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 5.9e-267 924.5 801 59.1
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.9e-266 922.2 817 60.2
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.2e-265 918.7 788 58.5
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 5.5e-265 917.9 771 59.8
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 3.6e-264 915.2 788 58.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 4.6e-264 914.8 830 57.8
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 5.1e-263 911.4 780 59.1
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 6.7e-263 911.0 792 58.8
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 8.8e-263 910.6 792 57.6
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.1e-262 910.2 786 59.0
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 1.1e-262 910.2 829 59.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.1e-262 910.2 785 58.3
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 2.5e-262 909.1 826 60.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.5e-262 909.1 830 57.3
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.3e-261 904.4 802 58.4
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 6.9e-260 901.0 785 58.6
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.9e-258 895.6 780 59.7
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 4.2e-257 891.7 786 58.7
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.0e-255 887.1 771 58.9
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 2.3e-255 885.9 812 56.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.1e-254 883.6 775 59.1
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 9.7e-254 880.6 854 54.8
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 9.1e-252 874.0 821 55.2
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.6e-251 872.5 779 57.8
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.6e-251 872.5 787 56.5
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 9.4e-249 864.0 785 56.4
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 2.1e-248 862.8 831 54.8
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.1e-246 857.1 843 56.0
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 1.5e-246 856.7 780 57.9
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 7.0e-244 847.8 796 54.6
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 9.1e-244 847.4 784 55.4
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.5e-243 845.1 868 55.1
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 7.2e-241 837.8 796 56.7
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 8.0e-240 834.3 861 54.8
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.0e-240 834.3 826 54.0
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 8.0e-240 834.3 803 54.2
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.8e-239 833.2 807 53.9
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 6.8e-239 831.2 797 55.3
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.2e-238 830.5 802 53.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.0e-238 829.7 784 54.5
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.6e-238 829.3 785 54.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.6e-238 829.3 785 54.5
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 7.5e-238 827.8 827 55.0
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 6.3e-237 824.7 795 55.0
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.3e-237 824.3 785 54.1
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.4e-236 823.5 855 52.4
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.4e-236 822.8 784 54.8
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.5e-235 818.9 788 53.6
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 7.7e-235 817.8 868 53.8
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.3e-234 817.0 762 56.3
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 8.0e-232 807.7 649 62.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.6e-230 802.7 789 52.7
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.0e-227 793.1 781 53.8
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 3.8e-226 788.9 799 53.7
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.9e-225 786.6 813 51.9
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.2e-224 783.9 785 52.1
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.1e-224 783.1 785 53.2
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 3.6e-224 782.3 803 52.7
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.0e-223 779.2 820 53.5
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 4.9e-221 771.9 799 52.1
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 8.3e-221 771.2 776 50.9
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.1e-220 770.8 799 51.9
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.1e-220 768.8 825 51.4
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.0e-218 762.7 787 52.5
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 8.6e-218 761.1 780 51.8
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 8.6e-218 761.1 776 51.0
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 3.1e-215 752.7 776 50.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.4e-213 745.0 795 50.3
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.4e-212 743.0 776 50.3
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 4.1e-212 742.3 776 49.7
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 2.0e-211 740.0 778 49.9
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 3.5e-211 739.2 779 50.3
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.0e-210 737.6 778 49.7
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.9e-209 733.4 778 49.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 9.5e-209 731.1 774 50.8
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.2e-208 730.7 777 49.8
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 3.6e-208 729.2 776 50.0
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 8.1e-208 728.0 785 51.8
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 9.8e-206 721.1 793 49.4
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 4.6e-203 712.2 815 50.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.5e-201 706.4 773 49.9
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.5e-198 697.2 678 53.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.7e-197 693.7 546 64.5
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 8.4e-197 691.4 808 47.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 2.4e-196 689.9 785 47.5
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 6.9e-191 671.8 847 46.6
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.2e-190 671.0 703 49.9
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.3e-189 667.5 792 46.8
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 3.5e-187 659.4 551 57.5
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.9e-173 612.5 617 54.1
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 2.1e-171 607.1 674 48.5
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.1e-168 597.0 820 40.0
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.9e-164 583.9 556 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 4.2e-164 582.8 810 41.5
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 7.9e-163 578.6 795 42.0
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 5.0e-157 559.3 790 39.9
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 2.8e-152 543.5 584 50.7
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 4.1e-143 513.1 773 39.3
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.6e-139 501.1 381 60.9
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 3.4e-121 440.3 381 56.4
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 5.5e-116 422.9 468 51.5
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.1e-111 408.7 432 48.8
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 4.0e-98 363.6 395 51.9
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 8.9e-98 362.5 475 45.9
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.5e-89 335.1 424 49.5
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 4.6e-86 323.6 479 44.3
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.4e-82 312.0 428 45.1
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 5.4e-79 300.1 522 33.5
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 2.5e-60 238.0 236 49.6
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.9e-48 198.0 198 54.5
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.4e-47 195.7 180 53.9
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.2e-46 192.6 359 38.4
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 5.1e-37 160.6 481 25.2
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.6e-28 131.7 184 42.9
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 4.1e-26 124.4 187 38.5
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 5.5e-23 114.0 147 46.3
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.7e-22 111.7 80 65.0
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 8.0e-22 110.2 78 60.3
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 8.8e-21 106.7 88 56.8
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 3.7e-19 101.3 215 32.6
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 6.1e-14 84.0 171 36.8
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 2.3e-13 82.0 107 47.7
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 2.3e-13 82.0 107 47.7
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 4.4e-12 77.8 369 28.2
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.7e-11 74.7 128 35.2
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 7.0e-10 70.5 69 46.4
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 7.7e-09 67.0 118 41.5
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 1.0e-08 66.6 74 47.3
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 2.2e-08 65.5 76 47.4
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 2.9e-08 65.1 39 79.5
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 8.5e-08 63.5 79 45.6
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.5e-08 63.5 96 43.8
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 1.5e-07 62.8 95 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1156 Anthoceros agrestis HOM05D006053 ORTHO05D008381 3.2e-07 61.6 133 33.1
MCO03G286 Micromonas commoda HOM05D005319 ORTHO05D006632 4.2e-07 61.2 70 38.6
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 5.5e-07 60.8 45 57.8
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 5.5e-07 60.8 45 57.8
Sp7g12310 Schrenkiella parvula HOM05D000285 ORTHO05D000241 9.4e-07 60.1 188 26.6
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 2.1e-06 58.9 158 30.4
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 2.7e-06 58.5 42 66.7
Nitab4.5_0000255g0260 Nicotiana tabacum HOM05D000285 ORTHO05D000241 2.7e-06 58.5 103 34.0
Os03g0123200 Oryza sativa ssp. japonica HOM05D006053 ORTHO05D008381 2.7e-06 58.5 84 40.5
Sabra10G0162000 Salix brachista HOM05D006053 ORTHO05D008381 2.7e-06 58.5 80 38.8
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 3.6e-06 58.2 40 67.5
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 3.6e-06 58.2 40 67.5
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.6e-06 58.2 51 56.9
Aa31LG2G15370 Aethionema arabicum HOM05D002097 ORTHO05D002248 4.7e-06 57.8 82 34.1
CDE11G0470 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 4.7e-06 57.8 121 31.4
FvH4_1g23920 Fragaria vesca HOM05D002097 ORTHO05D002248 4.7e-06 57.8 82 32.9
FAN23G2605 Fragaria x ananassa HOM05D002097 ORTHO05D002248 4.7e-06 57.8 82 32.9
FAN26G0991 Fragaria x ananassa HOM05D002097 ORTHO05D002248 4.7e-06 57.8 82 32.9
FAN28G1528 Fragaria x ananassa HOM05D002097 ORTHO05D002248 4.7e-06 57.8 82 32.9
Gohir.A11G223300 Gossypium hirsutum HOM05D002097 ORTHO05D002248 4.7e-06 57.8 104 28.8
Gohir.D11G227100 Gossypium hirsutum HOM05D002097 ORTHO05D002248 4.7e-06 57.8 104 28.8
Gorai.002G149800 Gossypium raimondii HOM05D002097 ORTHO05D002248 4.7e-06 57.8 104 28.8
PSO170G0540 Papaver somniferum HOM05D000285 ORTHO05D000241 4.7e-06 57.8 125 32.8
FAN19G0610 Fragaria x ananassa HOM05D002097 ORTHO05D002248 6.1e-06 57.4 93 29.0
Nitab4.5_0005918g0040 Nicotiana tabacum HOM05D000285 ORTHO05D000241 6.1e-06 57.4 103 33.0
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 6.1e-06 57.4 79 38.0
RcHm_v2.0_Chr2g0119921 Rosa chinensis HOM05D002097 ORTHO05D002248 6.1e-06 57.4 93 29.0
Zm00001eb240020 Zea mays HOM05D000285 ORTHO05D000241 6.1e-06 57.4 90 35.6
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 8.0e-06 57.0 135 30.4
HPP92_007901 Vanilla planifolia HOM05D000285 ORTHO05D000241 8.0e-06 57.0 89 33.7


User provided reference genes

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