Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 2197.2 1109 100.0
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 2107.0 1109 95.5
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 2033.1 1107 92.5
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1861.7 1090 85.7
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1541.9 1110 68.3
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1531.9 1110 68.0
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1529.2 1109 68.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1498.4 1101 68.8
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1112 66.9
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1495.3 1109 66.9
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1494.2 1109 66.9
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1491.9 1102 68.5
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1109 66.6
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1488.8 1110 67.3
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1485.7 1114 66.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1484.5 1109 66.3
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1484.2 1115 66.8
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1483.4 1115 66.8
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1481.8 1109 66.3
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1479.9 1100 66.7
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1476.5 1109 66.4
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1474.9 1115 67.1
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1466.1 1114 66.3
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1464.9 1112 65.9
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1464.5 1118 65.4
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1462.6 1116 66.0
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1460.7 1113 66.7
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1457.6 1115 66.5
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1453.3 1115 66.8
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1450.6 1106 64.6
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1447.6 1114 65.0
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1445.3 1115 66.0
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1436.8 1114 65.0
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1430.6 1105 64.7
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1428.3 1118 62.9
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1422.1 1116 63.7
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1418.7 1105 64.1
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1415.6 1107 64.3
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1415.2 1107 63.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1411.4 1114 63.2
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1409.0 1109 63.8
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1407.1 1106 64.1
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1405.2 1112 62.8
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1405.2 1114 62.7
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1395.9 1108 63.4
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1395.6 1109 62.5
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1385.5 1108 63.4
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1385.5 1108 63.1
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1385.5 1107 62.7
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1384.0 1108 63.0
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1377.5 1107 62.7
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1376.7 1108 62.5
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1375.1 1108 62.6
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1375.1 1125 61.8
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1374.8 1107 63.1
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1369.8 1106 62.7
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1368.2 1117 62.0
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1367.4 1115 61.7
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1361.7 1109 60.9
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1359.0 1115 61.3
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1354.7 1110 62.0
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1353.6 1112 60.9
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1347.4 1113 61.5
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1344.7 1118 60.4
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1344.3 1120 61.4
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1335.1 1110 61.2
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1332.0 1114 60.4
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1321.6 1115 60.3
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1321.6 1115 60.3
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1320.8 1113 60.5
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1320.8 1110 59.4
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1320.8 1113 60.2
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1318.5 1113 60.6
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1317.0 1115 60.2
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1315.1 1128 59.5
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1313.5 1113 60.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1306.6 1109 60.3
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1299.6 1105 59.8
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1297.7 1113 59.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1292.3 1119 58.4
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1275.4 1141 57.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1273.1 1126 57.4
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1270.0 1109 58.6
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1256.5 1113 57.6
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1251.9 977 63.7
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1243.4 1111 57.4
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1219.9 1106 56.5
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1206.0 1113 56.9
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1174.8 1125 53.0
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1174.1 1068 57.7
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1146.3 1103 52.3
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1110.9 1129 51.2
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1100.5 1288 47.3
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1093.6 864 64.5
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1080.5 1103 51.4
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 3.3e-310 1068.5 1109 53.3
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 5.6e-297 1024.6 756 68.7
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 5.6e-281 971.5 730 64.9
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 8.1e-264 914.4 1034 46.6
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 4.5e-262 908.7 1113 46.9
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 1.1e-257 894.0 688 63.8
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 4.0e-210 736.1 1150 38.3
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 5.7e-209 732.3 1154 39.1
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 1.2e-206 724.5 1159 36.9
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.4e-199 701.0 1086 38.2
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.4e-199 699.1 804 47.5
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 5.1e-165 586.3 635 47.6
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 7.6e-137 492.7 358 70.1
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 2.0e-129 468.0 460 54.8
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 7.9e-126 456.1 1289 29.8
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 2.9e-80 304.7 1210 27.4
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 4.6e-73 280.8 236 57.2
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 3.0e-72 278.1 305 47.9
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.7e-64 252.3 667 31.6
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.1e-63 249.6 196 66.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 9.5e-63 246.5 158 65.8
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.6e-49 201.1 205 50.2
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.0e-48 198.4 167 62.9
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-46 193.0 227 45.8
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 8.4e-43 180.3 1093 24.3
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 4.3e-39 167.9 1204 24.9
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.8e-38 165.2 131 65.6
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 4.0e-37 161.4 147 59.9
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 7.6e-36 157.1 122 65.6
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 3.9e-32 144.8 283 38.9
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 8.4e-27 127.1 139 49.6


User provided reference genes

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