Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.0e-148 530.0 261 100.0
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 4.3e-139 498.0 259 94.2
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.8e-138 495.4 258 94.6
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.4e-136 488.4 261 92.7
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 4.4e-136 488.0 261 92.7
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.7e-135 486.1 253 94.1
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.9e-135 485.3 253 93.7
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.9e-135 485.3 257 93.0
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.9e-135 485.3 257 93.0
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 3.5e-133 478.4 261 91.6
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.0e-133 477.6 261 91.6
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 1.5e-131 473.0 261 90.0
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 7.3e-131 470.7 233 98.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-130 469.2 251 93.2
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-130 469.2 251 93.2
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-130 469.2 251 93.2
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-130 469.2 251 93.2
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-130 469.2 251 93.2
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.1e-129 466.8 249 93.2
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-129 466.8 242 94.6
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.1e-129 466.8 243 94.2
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.8e-129 466.1 248 93.1
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 1.5e-128 463.0 254 91.7
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-126 454.5 239 93.7
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-126 454.5 239 93.7
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 6.0e-125 451.1 237 93.7
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 6.0e-125 451.1 237 93.7
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.1e-123 446.8 237 93.2
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 1.1e-123 446.8 253 88.5
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.5e-123 446.4 237 92.4
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 4.7e-122 441.4 233 93.6
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.1e-121 440.3 261 87.0
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.5e-120 436.4 253 88.9
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-120 434.5 233 91.8
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.2e-119 432.6 232 91.8
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-119 432.2 234 91.9
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.9e-115 419.5 244 83.2
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 3.6e-114 415.2 221 93.2
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.1e-113 413.7 228 89.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.4e-110 403.3 285 74.7
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 2.4e-110 402.5 286 74.1
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 3.2e-110 402.1 253 78.3
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 2.1e-109 399.4 254 76.8
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.7e-109 399.1 281 74.0
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.7e-109 399.1 281 74.0
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 7.1e-102 374.4 215 85.6
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 3.5e-101 372.1 204 90.7
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.8e-97 359.8 206 85.4
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 5.8e-96 354.8 192 92.7
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 3.2e-94 349.0 202 87.6
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.1e-93 346.3 191 91.1
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 7.4e-91 337.8 183 90.7
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.3e-84 317.0 170 93.5
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 6.5e-79 298.1 167 88.6
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 3.7e-74 282.3 169 82.2
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.2e-70 269.2 196 74.0
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.2e-70 269.2 196 74.0
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 7.9e-69 264.6 127 100.0
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.0e-64 250.0 153 84.3
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 4.5e-64 248.8 189 70.4
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 1.5e-59 233.8 127 89.8
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 3.3e-59 232.6 137 85.4
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.7e-58 230.3 128 89.1
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-58 229.9 128 87.5
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-58 229.2 128 87.5
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-58 229.2 128 87.5
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-58 229.2 128 87.5
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-58 229.2 128 87.5
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-58 229.2 128 87.5
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 4.8e-58 228.8 128 88.3
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.4e-57 227.3 120 90.8
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.1e-57 226.1 128 87.5
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.5e-56 222.2 128 85.9
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 2.2e-55 219.9 128 85.2
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.6e-53 212.6 114 90.4
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 6.1e-53 211.8 111 91.9
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.2e-51 207.6 110 90.9
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 2.0e-51 206.8 132 78.8
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 6.3e-50 201.8 123 82.1
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 1.8e-49 200.3 114 85.1
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.5e-48 196.1 105 90.5
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.5e-46 189.9 139 64.0
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.7e-45 186.4 96 93.8
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-42 176.0 93 89.2
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 1.8e-41 173.7 115 76.5
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 3.1e-41 172.9 104 83.7
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.4e-41 172.2 103 83.5
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.4e-41 172.2 103 83.5
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 5.4e-41 172.2 103 83.5
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-41 171.4 84 96.4
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.2e-40 171.0 105 78.1
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 4.5e-40 169.1 106 84.0
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 1.7e-39 167.2 117 67.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.6e-39 164.9 91 87.9
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.6e-39 164.9 91 87.9
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-38 163.7 98 80.6
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 9.5e-38 161.4 96 85.4
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 9.5e-38 161.4 96 85.4
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 6.1e-37 158.7 92 80.4
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 1.8e-36 157.1 87 87.4
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.0e-35 153.7 84 89.3
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 5.7e-35 152.1 150 56.7
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.7e-34 150.6 142 59.2
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 2.7e-32 143.3 74 89.2
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 1.3e-31 141.0 72 97.2
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 3.0e-31 139.8 84 85.7
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 8.6e-31 138.3 72 90.3
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 8.6e-31 138.3 74 87.8
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-30 137.1 103 66.0
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 3.3e-30 136.3 67 92.5
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 7.3e-30 135.2 105 59.0
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 8.0e-29 131.7 128 56.2
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 1.0e-28 131.3 105 66.7
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.8e-28 130.6 74 83.8
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 4.0e-28 129.4 128 47.7
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 4.4e-27 125.9 67 92.5
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 4.4e-27 125.9 76 76.3
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 4.9e-26 122.5 60 91.7
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.9e-26 122.5 120 55.8
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.0e-24 117.1 61 93.4
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 6.0e-24 115.5 107 55.1
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.0e-23 114.8 80 62.5
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.5e-22 110.9 58 86.2
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.5e-22 110.9 95 63.2
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 2.5e-22 110.2 203 37.4
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-21 107.8 58 91.4
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.1e-21 105.1 257 33.5
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.8e-20 104.0 70 70.0
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.2e-19 101.3 54 88.9
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 3.4e-19 99.8 56 78.6
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-18 96.3 46 93.5
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.9e-18 95.9 60 78.3
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 3.2e-17 93.2 54 83.3
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 4.1e-17 92.8 44 93.2
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 4.1e-17 92.8 44 93.2
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-17 92.8 58 81.0
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 3.5e-16 89.7 46 91.3
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 3.3e-14 83.2 71 64.8
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-13 81.3 48 85.4
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 1.2e-13 81.3 51 74.5
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 4.7e-13 79.3 48 77.1
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 6.2e-13 79.0 98 46.9
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.8e-12 77.4 110 45.5
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 3.4e-11 73.2 44 77.3
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-10 70.1 49 67.3
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 4.9e-10 69.3 45 82.2
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-09 67.4 49 69.4
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 2.4e-09 67.0 72 55.6
Nitab4.5_0000216g0120 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.2e-08 64.7 29 93.1
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-08 64.7 77 50.6
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 2.3e-07 60.5 48 64.6
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-06 57.4 36 77.8
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 7.3e-06 55.5 49 57.1
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 9.6e-06 55.1 156 29.5


User provided reference genes

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