Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.4e-162 576.2 289 100.0
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 6.3e-160 567.4 289 98.6
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.9e-157 558.5 289 96.5
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 1.2e-142 510.0 289 90.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.6e-142 509.6 289 87.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.2e-137 493.4 292 83.2
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.4e-137 491.5 293 84.3
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.9e-136 488.8 292 82.2
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 82.2
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.9e-135 486.1 292 82.9
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.2e-135 485.3 292 80.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.1e-135 485.0 292 82.9
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 80.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.5e-134 481.9 292 82.2
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-134 481.5 290 80.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.0e-133 480.3 290 81.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.3e-133 479.9 292 81.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.1e-132 476.9 292 80.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.1e-132 476.9 292 79.5
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.1e-132 476.9 291 82.5
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.5e-132 476.5 294 82.0
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.5e-132 475.7 292 80.1
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 4.3e-132 474.9 291 81.8
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 79.8
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 80.8
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 5.6e-132 474.6 290 81.0
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 9.5e-132 473.8 292 80.5
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 3.6e-131 471.9 290 79.0
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.4e-130 469.9 292 79.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.4e-130 469.9 290 78.6
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 8.9e-130 467.2 292 78.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 8.9e-130 467.2 291 79.4
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-129 466.8 290 79.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-129 466.1 294 78.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.3e-128 463.4 323 74.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.9e-128 462.2 292 77.1
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 4.9e-128 461.5 292 77.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.4e-128 461.1 280 79.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 6.4e-128 461.1 292 77.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.4e-127 459.9 292 78.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.4e-127 459.1 292 77.1
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 5.4e-127 458.0 292 77.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 2.7e-126 455.7 292 78.1
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.5e-126 455.3 292 77.7
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 3.5e-126 455.3 290 76.9
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.6e-126 454.9 293 77.8
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 7.8e-126 454.1 291 77.3
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 7.8e-126 454.1 294 76.9
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.0e-125 453.8 290 76.6
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.0e-125 452.2 292 76.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 5.1e-125 451.4 273 82.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 8.7e-125 450.7 293 76.5
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 76.0
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 77.0
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.5e-124 449.1 304 73.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.3e-124 448.7 292 75.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.6e-123 446.4 321 72.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.1e-123 446.0 326 69.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.2e-123 444.5 297 75.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 8.1e-123 444.1 292 75.0
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.8e-122 443.0 292 76.0
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.8e-122 443.0 292 75.3
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.5e-121 439.9 293 75.1
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 4.4e-121 438.3 293 74.7
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.3e-120 436.8 292 75.7
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.7e-120 436.4 292 74.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-120 436.4 292 75.0
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 8.4e-120 434.1 294 75.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.2e-119 432.2 289 75.8
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.2e-119 432.2 268 78.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 5.4e-119 431.4 292 72.3
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 4.6e-118 428.3 291 74.2
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 6.0e-118 427.9 290 72.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-117 426.4 290 72.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.9e-117 425.2 290 72.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 5.1e-117 424.9 292 72.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 5.1e-117 424.9 292 72.3
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 6.6e-117 424.5 294 72.1
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 5.6e-116 421.4 297 73.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 9.6e-116 420.6 290 73.8
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.1e-115 419.5 299 71.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.8e-115 419.1 292 71.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 8.1e-115 417.5 294 71.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 8.1e-115 417.5 293 72.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.1e-114 417.2 237 85.7
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-114 415.2 293 71.7
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 4.0e-114 415.2 328 66.5
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 5.3e-114 414.8 292 70.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.9e-114 414.5 308 68.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 6.9e-114 414.5 289 72.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.0e-114 414.1 290 71.0
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.2e-113 413.7 310 67.4
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.2e-113 413.7 385 60.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.5e-113 411.8 292 70.2
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.9e-112 409.1 292 70.2
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.8e-112 408.7 289 69.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.4e-111 406.8 285 71.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 71.5
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 71.5
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-111 406.0 292 69.9
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-111 406.0 292 69.9
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.2e-110 403.7 291 71.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.6e-110 403.3 293 69.6
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 3.5e-110 402.1 292 69.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.9e-109 398.7 293 70.3
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 8.7e-109 397.5 291 69.4
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 7.4e-108 394.4 289 69.2
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 9.6e-108 394.0 289 69.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-107 393.7 231 82.7
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.1e-107 392.9 297 67.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.4e-106 389.4 292 67.5
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.3e-104 383.6 293 66.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.1e-103 380.6 296 67.2
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.4e-98 362.8 291 66.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.2e-97 360.5 292 63.4
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.5e-96 354.8 298 63.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.9e-95 353.2 227 73.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.0e-93 347.4 292 62.3
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-93 346.7 191 86.9
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.3e-92 342.0 293 59.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 9.7e-92 340.9 257 67.7
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.6e-91 340.1 292 63.7
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.7e-91 339.0 208 80.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 6.3e-91 338.2 270 65.2
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-90 337.4 239 70.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.5e-87 326.2 288 61.8
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.2e-87 325.9 283 59.7
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 6.5e-80 301.6 184 76.1
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.1e-76 290.8 295 51.9
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 3.3e-76 289.3 297 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.4e-76 288.9 191 70.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.5e-72 274.6 202 69.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.7e-70 269.6 292 51.7
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.5e-64 248.4 287 50.5
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 5.3e-58 228.8 293 48.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 5.3e-58 228.8 293 48.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 5.3e-58 228.8 293 48.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.8e-53 211.5 260 50.0
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.3e-47 193.0 105 88.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 8.9e-45 184.9 108 82.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.2e-41 174.5 225 47.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 6.1e-38 162.2 151 57.0
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.8e-37 160.6 154 57.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.2e-37 159.1 154 57.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.2e-37 159.1 154 57.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.7e-35 152.9 85 87.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 5.4e-34 149.1 194 41.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-32 143.3 106 67.9
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.4e-28 129.8 107 65.4
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 8.3e-27 125.2 73 79.5
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 8.3e-27 125.2 73 79.5
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 3.2e-26 123.2 72 79.2
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 4.3e-23 112.8 79 72.2
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.1e-21 108.2 93 63.4
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.0e-20 104.0 85 63.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 9.2e-18 95.1 132 41.7
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 6.0e-17 92.4 185 38.9
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 6.6e-16 89.0 86 55.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.2e-14 82.4 231 31.2
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 8.1e-14 82.0 59 66.1
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.2e-12 78.2 58 67.2
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 8.1e-06 55.5 41 58.5


User provided reference genes

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