Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 1.0e-298 1029.2 490 100.0
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 1.8e-284 981.9 497 95.0
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 2.7e-280 968.0 508 91.3
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 3.3e-270 934.5 493 89.0
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 6.4e-245 850.5 492 80.7
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 3.1e-239 831.6 496 78.0
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 4.0e-239 831.2 501 79.0
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 8.9e-239 830.1 490 79.2
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 7.5e-238 827.0 484 80.0
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 8.3e-237 823.5 481 78.8
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.9e-236 822.4 481 80.2
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.9e-236 822.4 492 78.3
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.4e-236 822.0 488 79.1
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 4.1e-236 821.2 490 77.8
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 2.1e-235 818.9 481 78.8
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 6.0e-235 817.4 478 80.1
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.7e-234 815.8 475 79.4
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 3.0e-234 815.1 471 81.1
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 3.9e-234 814.7 478 79.7
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 3.9e-234 814.7 480 79.4
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.9e-233 812.4 482 78.4
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 3.3e-233 811.6 484 78.3
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 7.3e-233 810.4 482 79.3
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 7.3e-233 810.4 475 79.6
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 4.7e-232 807.7 493 77.1
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 3.1e-231 805.1 492 76.0
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 5.2e-231 804.3 479 78.5
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 3.4e-230 801.6 481 78.4
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 1.7e-229 799.3 473 78.9
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 2.9e-229 798.5 458 81.9
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 3.7e-229 798.1 501 74.5
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 6.4e-229 797.3 509 74.3
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.9e-228 795.8 481 76.9
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.2e-228 795.0 496 75.2
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 3.2e-228 795.0 489 76.7
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 3.2e-228 795.0 481 77.8
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 4.1e-228 794.7 486 76.3
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 5.4e-228 794.3 490 76.3
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 5.4e-228 794.3 484 77.1
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 7.1e-228 793.9 490 76.7
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 1.2e-227 793.1 481 77.3
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 2.1e-227 792.3 483 75.8
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 3.5e-227 791.6 510 74.3
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 7.8e-227 790.4 482 77.0
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.7e-226 789.3 485 76.3
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 2.3e-226 788.9 491 76.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 5.1e-226 787.7 481 78.2
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 7.3e-225 783.9 483 76.6
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.4e-223 779.6 484 76.4
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.8e-223 779.2 480 76.5
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 1.8e-223 779.2 481 76.3
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 4.0e-223 778.1 488 74.0
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 4.4e-222 774.6 498 74.5
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 9.9e-222 773.5 487 74.7
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.2e-221 772.3 542 70.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 8.4e-221 770.4 516 72.3
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 8.4e-221 770.4 486 75.1
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.1e-220 770.0 480 75.0
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 1.1e-220 770.0 482 75.5
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 9.2e-220 766.9 518 69.7
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 1.2e-219 766.5 480 74.8
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.7e-219 765.4 486 74.7
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 3.0e-218 761.9 486 74.7
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 2.5e-217 758.8 527 70.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 1.3e-216 756.5 484 75.4
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 6.9e-215 750.7 475 75.2
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.9e-213 745.3 502 71.1
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 3.8e-213 745.0 487 71.7
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 2.1e-211 739.2 488 71.9
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 1.0e-210 736.9 490 71.6
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 3.3e-209 731.9 434 78.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 6.2e-208 727.6 516 68.0
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 6.2e-208 727.6 501 69.1
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.1e-207 726.9 464 74.1
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.2e-206 723.4 477 70.6
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 5.8e-206 721.1 469 71.6
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 3.8e-205 718.4 549 64.1
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 8.7e-202 707.2 474 69.2
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.9e-201 706.1 455 72.1
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 4.3e-201 704.9 477 69.4
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.7e-197 693.0 488 70.1
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 6.5e-197 691.0 497 69.4
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 4.3e-193 678.3 497 67.6
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.3e-192 676.8 469 67.0
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 1.4e-191 673.3 493 66.9
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 1.5e-190 669.8 502 67.5
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.4e-183 646.7 462 66.0
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 2.9e-181 639.0 467 64.2
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.0e-178 630.6 482 65.4
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 2.2e-176 622.9 473 61.1
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 8.2e-176 620.9 487 65.3
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 3.1e-175 619.0 387 75.7
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 4.5e-174 615.1 384 76.3
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 3.8e-173 612.1 473 60.7
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 5.1e-170 601.7 386 74.1
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 2.0e-169 599.7 388 74.2
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.3e-169 599.0 394 73.4
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 8.0e-163 577.8 392 70.7
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 8.8e-162 574.3 386 71.5
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 8.5e-157 557.8 468 58.5
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 9.4e-156 554.3 356 73.3
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 6.3e-152 541.6 474 56.1
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 2.0e-142 510.0 324 73.5
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 5.2e-138 495.4 480 55.2
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.4e-135 487.3 351 67.5
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.9e-127 460.3 243 86.0
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 4.1e-127 459.1 461 51.4
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 3.5e-126 456.1 364 63.2
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 1.3e-125 454.1 388 58.2
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 6.8e-122 441.8 468 47.2
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 4.1e-119 432.6 288 68.4
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.1e-115 420.2 283 69.6
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.7e-110 403.3 345 59.1
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 6.0e-94 349.0 185 83.2
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 2.8e-75 287.0 166 80.1
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 7.7e-65 252.3 480 35.6
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 9.1e-50 202.2 103 86.4
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 8.5e-48 195.7 94 89.4
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 4.1e-34 150.2 69 94.2
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.0e-33 147.9 81 81.5
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.5e-33 146.7 100 72.0
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.7e-32 144.8 93 68.8
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 8.0e-30 136.0 214 36.9
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 1.0e-29 135.6 128 57.0
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 3.1e-26 124.0 70 81.4
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 4.7e-22 110.2 199 34.7
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 8.0e-22 109.4 94 57.4
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.6e-17 95.1 55 83.6
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 8.3e-11 72.8 51 66.7
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 1.5e-07 62.0 50 58.0
BolC2t10740H Brassica oleracea HOM05D005885 ORTHO05D023940 7.3e-07 59.7 48 60.4


User provided reference genes

Program Settings