Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 2335.8 1185 100.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 2218.7 1185 94.9
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 2103.9 1226 86.6
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1869.0 1185 80.2
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1422.1 1178 61.9
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1384.0 1170 61.1
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1380.5 1393 53.3
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1369.0 1173 59.8
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1176 59.6
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1355.5 1129 62.3
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1354.3 1178 60.6
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1351.3 1167 59.8
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1350.5 1168 59.2
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1342.4 1166 58.9
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1340.5 1183 57.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1338.2 1178 58.4
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1337.0 1183 58.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1331.6 1166 58.6
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1327.0 1184 58.1
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1325.1 1181 58.4
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1324.7 1168 58.8
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1322.0 1168 58.7
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1315.1 1169 58.2
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1310.8 1181 56.5
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1298.1 1173 57.2
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1293.9 1169 57.4
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1289.6 1179 57.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1286.2 1178 55.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1280.4 1231 54.3
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1275.0 1178 56.3
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1265.4 1172 56.7
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1264.2 1196 57.0
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1261.1 1169 55.7
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1258.4 1179 55.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1255.0 1166 56.2
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1180 56.1
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1252.3 1165 55.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1249.2 1166 56.0
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1180 54.3
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1244.2 1185 54.3
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1243.8 1162 55.9
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1242.6 1165 55.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1238.8 1176 56.3
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1237.6 1157 55.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1229.2 1160 55.6
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1182 54.6
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1224.2 1162 55.4
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1216.4 1166 54.0
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1215.3 1167 54.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1211.4 1187 53.1
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1210.3 1169 53.6
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1205.7 1172 53.5
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1201.0 1169 54.1
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1196.8 1174 53.7
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1196.0 1172 53.0
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1196.0 1389 48.8
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1191.4 1174 53.5
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1187.6 1165 53.7
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1173 53.0
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1180.6 1165 52.6
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1179.5 1169 52.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1173.7 1202 52.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1172.1 1179 52.7
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1171.4 1169 52.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1171.4 1167 53.9
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1166.8 1165 51.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1164.8 1165 55.3
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1164.8 1176 51.5
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1154.4 1167 52.8
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1144.0 1185 50.4
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1140.6 1037 57.8
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1134.8 1165 51.2
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1118.6 1052 55.5
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1112.4 1171 50.9
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1099.7 1048 54.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1088.6 1173 49.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 8.0e-310 1067.4 1170 49.0
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 2.2e-307 1059.3 1130 49.9
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 3.5e-297 1025.4 1187 46.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-296 1023.8 1100 51.3
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 2.9e-291 1005.7 1204 46.4
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.1e-285 987.3 1189 45.1
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.5e-284 983.4 1128 48.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 2.5e-279 966.1 1110 47.6
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 8.1e-278 961.1 1171 45.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 4.9e-275 951.8 1159 46.4
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.1e-250 870.9 837 55.3
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.1e-247 860.9 754 58.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 9.1e-229 798.1 790 53.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.1e-223 781.2 716 57.5
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.9e-218 763.8 1127 40.9
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 6.8e-192 675.6 756 48.8
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.9e-174 617.1 595 53.3
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 5.4e-173 612.8 1194 34.1
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.6e-156 558.1 1188 33.5
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.9e-142 510.0 612 47.1
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.1e-132 478.0 442 56.3
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 4.3e-130 470.3 461 52.5
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-123 448.0 1124 30.9
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.0e-118 432.6 834 33.0
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.0e-115 422.5 390 55.4
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 9.1e-96 356.3 527 38.7
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.4e-90 337.4 423 42.6
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.5e-87 327.4 420 44.8
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 2.6e-74 285.0 289 50.2
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.2e-68 266.2 190 66.8
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 5.0e-62 244.2 184 62.0
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.9e-61 242.3 176 68.8
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.5e-47 194.9 311 40.2
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-44 186.4 237 48.1
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.8e-43 182.6 203 48.3
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-40 172.2 1069 23.2
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.4e-32 146.4 216 36.6
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.5e-31 141.7 120 59.2
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.8e-27 129.4 147 44.9
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 2.7e-15 89.0 121 44.6
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 4.6e-15 88.2 551 23.2
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.9e-13 82.8 58 62.1
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.1e-12 79.3 114 44.7
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 4.8e-12 78.2 356 27.5
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 8.2e-12 77.4 53 64.2
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 4.1e-11 75.1 58 56.9
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 9.0e-11 73.9 53 67.9
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.9e-08 66.2 48 58.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.2e-08 65.1 48 58.3
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 7.2e-08 64.3 53 54.7
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.3e-06 59.3 54 53.7


User provided reference genes

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