Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G036250 Cucumis sativus L. HOM05D001529 ORTHO05D007595 3.7e-31 137.5 66 100.0
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 1.5e-27 125.6 65 92.3
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 1.5e-27 125.6 65 92.3
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 1.5e-27 125.6 65 92.3
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 1.5e-27 125.6 65 92.3
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 1.6e-26 122.1 65 89.2
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 8.0e-26 119.8 65 86.2
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 2.3e-25 118.2 65 84.6
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 2.3e-25 118.2 65 84.6
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 4.0e-25 117.5 65 84.6
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 4.0e-25 117.5 65 84.6
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 4.0e-25 117.5 65 83.1
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 4.0e-25 117.5 65 83.1
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 5.2e-25 117.1 65 84.6
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 5.2e-25 117.1 65 83.1
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 5.2e-25 117.1 65 83.1
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 6.8e-25 116.7 65 83.1
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 6.8e-25 116.7 65 84.6
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 81.5
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
Eucgr.A01062 Eucalyptus grandis HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 84.6
MD00G1024000 Malus domestica HOM05D001529 ORTHO05D018658 8.8e-25 116.3 65 81.5
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 81.5
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 8.8e-25 116.3 65 83.1
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 86.2
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 86.2
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Hma1.2p1_0405F.1_g145730 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Nitab4.5_0004358g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 83.1
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 1.2e-24 115.9 65 84.6
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.5e-24 115.5 65 81.5
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 1.5e-24 115.5 65 81.5
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 1.5e-24 115.5 65 81.5
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 1.5e-24 115.5 65 83.1
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 81.5
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 81.5
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 81.5
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 81.5
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 83.1
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 83.1
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 83.1
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 2.0e-24 115.2 65 83.1
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 2.6e-24 114.8 65 83.1
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 2.6e-24 114.8 65 81.5
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 2.6e-24 114.8 65 83.1
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 3.4e-24 114.4 65 84.6
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 3.4e-24 114.4 65 80.0
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 3.4e-24 114.4 65 81.5
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 3.4e-24 114.4 65 81.5
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 80.0
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 80.0
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
MD05G1180100 Malus domestica HOM05D001529 ORTHO05D018658 4.4e-24 114.0 65 81.5
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 80.0
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 81.5
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 4.4e-24 114.0 65 83.1
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 5.7e-24 113.6 65 80.0
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 5.7e-24 113.6 65 80.0
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 5.7e-24 113.6 65 81.5
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 5.7e-24 113.6 65 83.1
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 5.7e-24 113.6 65 80.0
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 7.5e-24 113.2 65 80.0
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 7.5e-24 113.2 65 78.5
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 7.5e-24 113.2 65 81.5
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 7.5e-24 113.2 65 80.0
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 7.5e-24 113.2 65 80.0
MD05G1333800 Malus domestica HOM05D001529 ORTHO05D018658 1.3e-23 112.5 65 81.5
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 1.3e-23 112.5 65 80.0
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 1.3e-23 112.5 65 80.0
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 1.7e-23 112.1 65 78.5
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 2.2e-23 111.7 65 80.0
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 2.8e-23 111.3 65 78.5
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 1.8e-22 108.6 65 76.9
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 2.4e-22 108.2 65 75.4
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 3.1e-22 107.8 65 75.4
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 7.0e-22 106.7 65 72.3
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 9.1e-22 106.3 66 78.8
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 9.1e-22 106.3 65 73.8
MD15G1401400 Malus domestica HOM05D001529 ORTHO05D018658 2.0e-21 105.1 62 79.0
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 1.3e-20 102.4 66 75.8
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 1.7e-20 102.1 66 72.7
MD17G1111300 Malus domestica HOM05D001529 ORTHO05D018658 2.9e-20 101.3 57 78.9
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 1.1e-19 99.4 66 72.7
Glyma.U011002 Glycine max HOM05D001529 ORTHO05D007595 9.5e-19 96.3 54 81.5
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 4.7e-18 94.0 65 67.7
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 2.6e-16 88.2 65 67.7
MD15G1401900 Malus domestica HOM05D001529 ORTHO05D018658 5.7e-16 87.0 50 82.0
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 2.8e-15 84.7 66 65.2
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 2.4e-14 81.6 47 78.7
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 1.6e-13 79.0 68 57.4
SMO139G0098 Selaginella moellendorffii HOM05D009802 ORTHO05D050857 2.3e-09 65.1 47 72.3
SMO145G0067 Selaginella moellendorffii HOM05D009802 ORTHO05D050857 9.8e-08 59.7 45 68.9
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.9e-07 58.2 33 81.8
BcaB08g34493 Brassica carinata HOM05D001529 ORTHO05D018658 4.9e-07 57.4 36 75.0
Pp3c1_30300 Physcomitrium patens HOM05D001529 ORTHO05D050322 6.4e-07 57.0 44 63.6


User provided reference genes

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