Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 5.0e-73 277.7 143 100.0
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.6e-66 255.4 142 91.5
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.4e-61 238.0 146 87.7
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.2e-58 229.9 144 82.6
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 9.5e-32 140.6 136 57.4
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 6.1e-31 137.9 128 60.9
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 92 73.9
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.8e-30 136.3 112 65.2
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 2.3e-30 136.0 143 57.3
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 4.0e-30 135.2 147 51.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.2e-30 134.8 105 70.5
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 8.9e-30 134.0 144 55.6
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 8.9e-30 134.0 144 55.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 8.9e-30 134.0 128 58.6
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.2e-29 133.7 98 69.4
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 2.0e-29 132.9 93 69.9
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 5.8e-29 131.3 129 57.4
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.8e-29 131.3 125 58.4
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.3e-28 130.2 103 65.0
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.3e-28 130.2 133 57.9
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.7e-28 129.8 97 64.9
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 2.2e-28 129.4 101 63.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 2.9e-28 129.0 135 57.8
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 2.9e-28 129.0 140 57.1
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-27 125.9 75 73.3
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-27 125.9 75 73.3
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.4e-27 125.9 75 73.3
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 4.1e-27 125.2 133 51.9
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 4.1e-27 125.2 84 72.6
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 7.0e-27 124.4 143 55.2
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 7.0e-27 124.4 75 72.0
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 7.0e-27 124.4 75 72.0
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 7.0e-27 124.4 75 72.0
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 2.0e-26 122.9 77 74.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 3.5e-26 122.1 126 53.2
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-26 122.1 77 74.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.5e-26 122.1 70 77.1
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 4.6e-26 121.7 86 65.1
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 4.6e-26 121.7 77 77.9
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 7.8e-26 120.9 77 72.7
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.3e-25 120.2 78 71.8
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.3e-25 120.2 77 76.6
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.3e-25 120.2 77 74.0
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.7e-25 119.8 75 69.3
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.3e-25 119.4 77 76.6
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 6.6e-25 117.9 74 74.3
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 8.6e-25 117.5 143 51.0
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 8.6e-25 117.5 143 51.0
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.1e-24 117.1 77 75.3
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.1e-24 117.1 101 62.4
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.9e-24 116.3 81 67.9
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.9e-24 116.3 81 67.9
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.9e-24 116.3 81 67.9
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.5e-24 115.9 77 71.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-23 113.2 81 66.7
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 2.1e-23 112.8 82 67.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.1e-23 112.8 77 70.1
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.8e-22 109.8 67 79.1
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 3.1e-22 109.0 77 63.6
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 5.2e-22 108.2 70 70.0
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 7.5e-21 104.4 76 67.1
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 9.8e-21 104.0 79 69.6
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 9.8e-21 104.0 79 69.6
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 9.8e-21 104.0 79 69.6
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 1.3e-20 103.6 79 68.4
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.7e-20 103.2 59 83.1
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.2e-20 102.8 76 67.1
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 2.9e-20 102.4 76 67.1
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 6.4e-20 101.3 66 69.7
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.9e-19 99.8 123 52.0
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.9e-19 99.8 123 52.0
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.9e-19 99.8 123 52.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-19 99.8 57 77.2
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 2.4e-19 99.4 125 51.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.1e-19 98.6 79 58.2
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.6e-18 96.7 67 65.7
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-18 96.7 67 65.7
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.6e-18 95.1 67 64.2
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 7.8e-18 94.4 71 60.6
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-17 93.6 75 61.3
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.3e-17 93.6 75 61.3
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-17 93.6 75 61.3
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.3e-17 93.6 75 61.3
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 1.7e-17 93.2 60 71.7
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 5.6e-16 88.2 60 68.3
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 9.5e-16 87.4 65 66.2
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.2e-15 87.0 68 63.2
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 2.8e-15 85.9 62 62.9
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.7e-15 85.1 61 63.9
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.1e-14 84.0 50 72.0
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 1.4e-14 83.6 70 58.6
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.9e-14 80.9 104 40.4
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.9e-12 75.1 69 58.0
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 6.4e-12 74.7 60 56.7
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-11 73.9 53 62.3
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.9e-11 73.2 64 56.2
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.9e-11 73.2 64 56.2
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 2.4e-11 72.8 60 58.3
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.2e-10 70.5 114 35.1
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.0e-09 65.9 79 51.9
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.1e-08 63.9 78 42.3
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.5e-08 60.8 45 64.4
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.5e-08 60.8 78 41.0
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 2.8e-07 59.3 39 66.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.8e-06 56.6 42 61.9
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.8e-06 56.6 79 46.8
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.4e-06 56.2 41 65.9
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 3.1e-06 55.8 36 69.4
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.8e-06 54.7 79 44.3


User provided reference genes

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