Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 7.6e-194 680.2 326 100.0
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.4e-179 632.1 326 93.6
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 4.0e-179 631.3 326 92.0
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 2.5e-168 595.5 326 85.6
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 4.0e-118 428.7 327 63.3
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 7.5e-117 424.5 327 61.2
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 7.5e-117 424.5 320 62.2
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 1.7e-116 423.3 310 63.2
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 2.8e-116 422.5 313 63.3
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 3.7e-116 422.2 281 66.5
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.7e-116 422.2 281 66.5
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 7.0e-115 417.9 254 72.8
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 2.7e-114 416.0 324 61.7
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.7e-114 416.0 323 62.2
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.7e-114 416.0 309 65.4
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 5.9e-114 414.8 262 68.7
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 1.7e-113 413.3 333 61.9
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 3.8e-113 412.1 325 60.9
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 1.9e-112 409.8 324 62.7
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 3.3e-112 409.1 324 59.9
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 3.3e-112 409.1 282 66.0
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 7.3e-112 407.9 333 59.8
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 1.2e-111 407.1 306 63.4
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 1.2e-111 407.1 327 60.2
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 2.8e-111 406.0 313 61.0
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 6.1e-111 404.8 310 61.9
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 6.1e-111 404.8 361 54.3
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 1.0e-110 404.1 289 64.7
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.8e-110 403.3 330 59.4
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 2.6e-109 399.4 261 69.7
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 2.6e-109 399.4 322 58.7
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 3.4e-109 399.1 283 63.3
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 3.4e-109 399.1 321 59.2
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.3e-108 397.1 316 58.9
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 1.7e-108 396.7 305 60.7
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 2.2e-108 396.4 302 60.6
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 3.7e-108 395.6 303 60.4
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 4.9e-108 395.2 259 68.7
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 1.1e-107 394.0 324 58.6
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 1.1e-107 394.0 309 62.5
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 2.4e-107 392.9 314 58.9
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 3.2e-107 392.5 321 57.9
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 7.0e-107 391.3 276 63.0
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 1.2e-106 390.6 263 67.7
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 1.6e-106 390.2 308 60.1
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 2.0e-106 389.8 330 58.8
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 3.5e-106 389.0 322 58.7
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 7.8e-106 387.9 260 66.5
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 1.0e-105 387.5 291 61.2
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.0e-105 387.5 339 57.2
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.3e-105 387.1 300 61.3
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.3e-105 387.1 305 61.0
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.7e-105 386.7 289 60.6
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 1.7e-105 386.7 287 61.3
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 5.0e-105 385.2 292 60.3
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 1.1e-104 384.0 291 60.5
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.5e-104 383.6 259 66.0
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.9e-104 383.3 298 57.4
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 4.3e-104 382.1 291 60.1
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 5.6e-104 381.7 294 62.9
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 5.6e-104 381.7 285 62.8
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.8e-103 379.4 327 55.0
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 3.6e-103 379.0 355 53.5
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 8.0e-103 377.9 292 60.6
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.1e-102 377.5 297 57.6
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.4e-102 377.1 259 66.0
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 3.1e-102 375.9 259 63.7
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 6.8e-102 374.8 335 56.7
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 8.9e-102 374.4 336 56.8
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.5e-101 373.6 248 64.5
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 5.8e-101 371.7 259 63.3
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 4.9e-100 368.6 309 58.3
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 6.4e-100 368.2 260 60.8
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 8.3e-100 367.9 302 58.6
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.9e-99 366.7 260 60.8
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 7.0e-99 364.8 309 56.3
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 4.6e-98 362.1 326 55.5
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 4.6e-98 362.1 324 56.2
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 1.3e-97 360.5 328 55.2
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 2.3e-97 359.8 251 65.3
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 3.3e-96 355.9 247 68.0
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 4.3e-96 355.5 244 66.0
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.1e-94 350.9 281 55.5
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 8.9e-94 347.8 299 56.5
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 5.4e-91 338.6 243 60.5
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 1.6e-90 337.0 257 59.1
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.5e-88 330.5 308 53.6
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 1.6e-87 327.0 284 52.5
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.4e-85 318.9 207 69.6
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 6.4e-84 315.1 313 49.2
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 2.7e-82 309.7 255 54.1
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 4.6e-82 308.9 210 63.8
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.9e-81 305.8 245 58.4
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 7.3e-80 301.6 282 48.6
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 2.9e-76 289.7 177 71.8
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 3.8e-76 289.3 265 51.7
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 6.4e-76 288.5 264 49.6
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.1e-67 261.2 225 55.1
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.6e-66 255.8 262 48.9
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.3e-65 253.4 338 41.7
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 2.8e-55 219.9 158 64.6
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 4.8e-55 219.2 136 71.3
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 6.0e-50 202.2 143 60.8
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 8.7e-49 198.4 190 53.2
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 1.1e-46 191.4 150 60.0
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.3e-39 167.9 111 64.0
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 8.2e-39 165.2 165 52.1
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 4.1e-38 162.9 327 32.7
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.7e-34 150.2 159 48.4
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 5.7e-32 142.5 166 46.4
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.9e-27 127.5 85 62.4
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 1.1e-24 118.2 148 43.2
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 8.2e-23 112.1 159 42.8
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.1e-22 111.7 85 63.5
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 3.2e-19 100.1 213 26.3
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 5.5e-19 99.4 204 28.4
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 5.5e-19 99.4 63 71.4
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 9.4e-19 98.6 282 24.1
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.2e-18 98.2 213 27.2
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 2.7e-18 97.1 205 27.3
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 3.6e-18 96.7 203 27.1
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 3.6e-18 96.7 205 27.8
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 4.7e-18 96.3 203 27.6
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 4.7e-18 96.3 205 28.3
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 4.7e-18 96.3 222 26.1
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 6.1e-18 95.9 253 24.5
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 6.1e-18 95.9 206 26.2
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 6.1e-18 95.9 206 26.2
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 6.1e-18 95.9 203 26.6
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 6.1e-18 95.9 213 28.2
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 8.0e-18 95.5 203 26.6
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 8.0e-18 95.5 213 26.8
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 1.4e-17 94.7 208 26.4
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 1.4e-17 94.7 219 25.1
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.8e-17 94.4 259 23.9
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 1.8e-17 94.4 208 26.0
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 1.8e-17 94.4 208 26.0
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 1.8e-17 94.4 203 26.6
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.8e-17 94.4 228 26.3
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.8e-17 94.4 206 25.7
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 2.3e-17 94.0 203 27.1
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 2.3e-17 94.0 218 27.1
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 3.0e-17 93.6 205 25.9
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.0e-17 93.6 214 26.6
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 3.0e-17 93.6 203 26.6
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 3.0e-17 93.6 242 24.8
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 4.0e-17 93.2 203 27.6
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 4.0e-17 93.2 203 26.1
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 5.2e-17 92.8 203 26.6
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.2e-17 92.8 214 26.2
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 5.2e-17 92.8 213 28.2
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 6.7e-17 92.4 210 27.1
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 6.7e-17 92.4 203 26.1
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 8.8e-17 92.0 203 26.1
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 8.8e-17 92.0 203 27.6
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 8.8e-17 92.0 203 26.1
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 1.2e-16 91.7 203 26.6
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.5e-16 91.3 208 25.5
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.5e-16 91.3 203 27.1
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 2.0e-16 90.9 203 25.6
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 2.0e-16 90.9 203 26.6
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 2.6e-16 90.5 203 26.1
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 3.3e-16 90.1 213 29.6
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 5.7e-16 89.4 217 25.8
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 9.7e-16 88.6 203 25.6
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.7e-15 87.8 62 62.9
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 26.6
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 2.2e-15 87.4 203 25.1
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 2.2e-15 87.4 203 25.6
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 3.1e-14 83.6 198 25.3
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 1.6e-13 81.3 67 55.2
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 7.7e-13 79.0 268 22.4
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.7e-12 77.8 215 22.8
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.1e-11 75.1 51 68.6
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 3.2e-11 73.6 210 26.2
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 3.7e-07 60.1 45 57.8


User provided reference genes

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