Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 1.8e-179 632.5 327 100.0
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 2.6e-170 602.1 327 95.1
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 7.9e-159 563.9 337 87.8
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 7.4e-149 530.8 326 82.8
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 1.7e-100 370.2 347 58.5
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 2.2e-100 369.8 346 59.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 8.3e-100 367.9 346 58.4
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.4e-99 367.1 345 58.3
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 5.4e-99 365.2 346 56.6
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 1.6e-98 363.6 346 59.2
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 2.7e-98 362.8 352 56.2
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.0e-97 360.9 353 57.5
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.0e-97 359.4 359 56.5
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 1.1e-96 357.5 341 57.8
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 7.3e-96 354.8 337 56.7
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.6e-95 353.6 346 58.7
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 8.1e-95 351.3 334 57.5
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 1.8e-94 350.1 347 55.6
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.5e-93 347.1 343 57.4
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 2.0e-93 346.7 302 59.3
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 2.6e-93 346.3 325 55.7
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 6.4e-92 341.7 309 58.9
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 6.4e-92 341.7 347 54.5
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 3.2e-91 339.3 346 54.0
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 3.2e-91 339.3 327 54.4
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 5.4e-91 338.6 344 55.2
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 5.4e-91 338.6 344 54.9
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 7.1e-91 338.2 350 55.4
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.2e-90 337.4 322 55.3
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 1.2e-90 337.4 347 53.6
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 1.6e-90 337.0 316 56.6
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 4.6e-90 335.5 344 53.8
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 2.3e-89 333.2 338 54.1
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 3.9e-89 332.4 339 54.6
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.9e-89 332.4 339 54.3
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 5.1e-89 332.0 290 58.6
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 6.6e-89 331.6 326 55.8
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 8.7e-89 331.3 338 55.0
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.1e-88 330.9 338 54.7
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.5e-88 330.5 338 54.4
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.5e-88 330.5 341 53.1
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 2.5e-88 329.7 342 52.9
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.5e-88 329.7 337 53.4
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 2.5e-88 329.7 339 53.4
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 4.3e-88 328.9 342 54.1
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 7.3e-88 328.2 339 53.7
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 9.6e-88 327.8 339 54.9
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 1.3e-87 327.4 338 55.0
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.3e-87 327.4 343 52.5
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 1.6e-87 327.0 335 54.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.6e-87 327.0 334 55.1
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 2.8e-87 326.2 343 53.9
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 3.6e-87 325.9 281 61.2
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.8e-87 325.5 341 52.8
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.1e-86 324.3 346 54.3
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.4e-86 323.9 343 52.8
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.4e-86 323.9 341 52.8
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.8e-86 323.6 341 52.5
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.8e-86 323.6 325 56.9
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 3.1e-86 322.8 339 52.2
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 5.3e-86 322.0 320 55.9
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 9.0e-86 321.2 327 56.3
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 3.4e-85 319.3 323 53.6
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.7e-84 317.0 351 52.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.3e-81 307.4 330 50.0
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 1.1e-80 304.3 330 52.1
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 4.3e-80 302.4 304 53.6
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 5.6e-80 302.0 317 54.9
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 9.6e-80 301.2 341 50.4
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 1.3e-79 300.8 350 49.7
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.8e-79 299.7 328 51.2
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 6.2e-79 298.5 339 52.2
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 1.1e-78 297.7 314 50.6
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 6.9e-78 295.0 288 52.4
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 6.9e-78 295.0 295 52.2
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 4.5e-77 292.4 322 50.0
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 9.9e-77 291.2 351 49.9
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 6.4e-76 288.5 321 48.6
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 4.2e-75 285.8 306 49.7
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 2.1e-74 283.5 314 52.2
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 5.1e-73 278.9 384 44.3
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 7.4e-72 275.0 331 46.8
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.3e-71 274.2 363 44.1
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.2e-69 267.7 335 47.2
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.9e-68 263.1 272 49.3
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 3.8e-68 262.7 333 44.7
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 2.1e-66 256.9 340 46.8
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 3.4e-61 239.6 230 51.3
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 3.9e-57 226.1 320 42.8
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.0e-52 211.5 339 44.0
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 5.5e-51 205.7 219 50.2
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 1.6e-50 204.1 291 40.5
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.7e-47 194.1 201 48.8
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 3.8e-44 183.0 280 40.7
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 5.7e-32 142.5 323 33.1
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.1e-30 138.3 259 38.6
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 5.9e-29 132.5 138 54.3
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 1.7e-28 131.0 96 59.4
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 6.5e-28 129.0 134 55.2
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.8e-23 113.6 123 51.2
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.1e-22 111.7 287 28.2
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.6e-21 107.8 131 51.9
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-21 105.9 299 29.4
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 2.0e-13 80.9 118 39.0
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 4.5e-13 79.7 84 47.6
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 9.5e-11 72.0 52 67.3
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 2.6e-08 63.9 321 24.3


User provided reference genes

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