Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.7e-38 162.2 79 100.0
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 2.2e-38 161.8 79 98.7
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.3e-35 152.5 79 92.4
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 92.4
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 3.9e-35 151.0 79 92.4
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 3.9e-35 151.0 79 93.7
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 5.1e-35 150.6 78 93.6
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.6e-35 150.2 79 89.9
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 8.6e-35 149.8 79 92.4
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 8.6e-35 149.8 79 92.4
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 8.6e-35 149.8 79 92.4
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 91.1
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 92.4
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 91.1
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 91.1
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-34 149.4 79 91.1
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.5e-34 149.1 79 92.4
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.9e-34 148.7 79 91.1
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.9e-34 148.7 78 91.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.9e-34 148.7 79 89.9
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 2.5e-34 148.3 79 88.6
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 2.5e-34 148.3 79 88.6
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 2.5e-34 148.3 79 88.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 3.3e-34 147.9 79 89.9
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 3.3e-34 147.9 79 89.9
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.3e-34 147.5 79 89.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 4.3e-34 147.5 79 91.1
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 7.3e-34 146.7 79 87.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 9.5e-34 146.4 79 89.9
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 9.5e-34 146.4 75 93.3
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.2e-33 146.0 79 89.9
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-33 146.0 79 88.6
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.6e-33 145.6 76 93.4
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.6e-33 145.6 76 93.4
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-33 145.6 79 88.6
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-33 145.6 79 88.6
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-33 145.2 76 92.1
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.7e-33 144.1 79 87.3
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 1.8e-32 142.1 75 90.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-32 141.7 76 89.5
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-32 141.7 76 89.5
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-32 141.7 76 89.5
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-32 141.7 76 89.5
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 3.1e-32 141.4 75 90.7
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.2e-31 139.4 74 89.2
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 1.5e-31 139.0 75 89.3
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 1.5e-31 139.0 75 89.3
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.4e-31 137.5 79 84.8
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.6e-31 136.7 79 82.3
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.6e-31 136.7 75 86.7
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 1.3e-30 136.0 79 81.0
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.7e-30 135.6 74 89.2
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.7e-30 135.6 78 83.3
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.7e-30 135.6 78 83.3
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.7e-30 135.6 78 83.3
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 1.7e-30 135.6 78 83.3
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 2.2e-30 135.2 65 100.0
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.9e-30 134.8 79 82.3
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 3.8e-30 134.4 79 79.7
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 4.9e-30 134.0 79 77.2
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 4.9e-30 134.0 79 77.2
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.4e-30 133.7 79 78.5
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.4e-30 133.7 79 78.5
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-29 132.9 73 86.3
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.4e-29 132.5 79 75.9
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.4e-29 131.7 74 85.1
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.2e-28 129.4 79 77.2
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 4.6e-28 127.5 76 81.6
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 1.0e-27 126.3 79 78.5
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 1.0e-27 126.3 70 91.4
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.3e-27 125.9 75 77.3
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-27 125.6 65 95.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.3e-26 121.3 79 77.2
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 5.6e-26 120.6 70 78.6
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 5.6e-26 120.6 66 87.9
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-25 118.6 65 89.2
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.2e-25 117.1 71 85.9
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-24 115.9 67 80.6
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 1.8e-24 115.5 65 84.6
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 2.0e-23 112.1 61 90.2
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 3.8e-22 107.8 61 83.6
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 4.9e-22 107.5 61 90.2
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.9e-21 105.5 60 85.0
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.2e-21 104.8 74 67.6
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 3.2e-21 104.8 74 67.6
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.2e-21 104.8 74 67.6
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.2e-21 104.8 74 67.6
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.2e-21 104.8 74 67.6
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.2e-21 104.8 74 67.6
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.2e-21 104.8 74 67.6
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.2e-20 102.8 74 66.2
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 2.7e-20 101.7 74 66.2
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.7e-20 101.7 74 64.9
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 4.6e-20 100.9 74 64.9
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 7.8e-20 100.1 52 94.2
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 7.8e-20 100.1 62 83.9
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 2.3e-19 98.6 77 62.3
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.3e-19 98.6 63 71.4
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.3e-19 98.6 63 71.4
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.0e-19 98.2 54 90.7
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.1e-18 96.3 60 76.7
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.9e-18 95.5 60 78.3
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.8e-17 90.9 79 60.8
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 2.2e-14 82.0 58 74.1
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-13 79.7 41 97.6
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.1e-13 79.7 75 60.0
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 1.9e-13 79.0 61 63.9
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.2e-12 76.3 39 94.9
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.6e-12 74.3 41 87.8
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.1e-10 69.7 39 87.2
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.4e-10 67.0 35 97.1
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.1e-08 63.2 82 40.2
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.1e-08 63.2 82 40.2
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.1e-08 63.2 82 40.2
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.1e-08 63.2 82 40.2
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.1e-08 63.2 82 40.2
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.4e-08 62.8 73 38.4
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 4.0e-08 61.2 67 43.3
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 1.5e-07 59.3 67 44.8
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 1.5e-07 59.3 67 44.8
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 2.0e-07 58.9 67 43.3
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 2.0e-07 58.9 67 43.3
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 2.0e-07 58.9 67 43.3
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.0e-07 58.9 33 84.8
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 2.0e-07 58.9 67 43.3
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.6e-07 58.5 67 43.3
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.6e-07 58.5 67 43.3
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 3.4e-07 58.2 67 43.3
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.4e-07 58.2 67 41.8
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 5.8e-07 57.4 37 75.7
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 5.8e-07 57.4 53 60.4
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 5.8e-07 57.4 67 41.8
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-07 57.4 67 41.8
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-07 57.4 67 41.8
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-07 57.4 67 41.8
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 7.6e-07 57.0 67 41.8
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 9.9e-07 56.6 35 77.1
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 9.9e-07 56.6 67 41.8
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 9.9e-07 56.6 67 41.8
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.3e-06 56.2 34 85.3
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 1.3e-06 56.2 67 41.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.2e-06 55.5 28 96.4
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 3.8e-06 54.7 67 41.8
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 3.8e-06 54.7 67 41.8
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 4.9e-06 54.3 66 40.9
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 4.9e-06 54.3 57 42.1
Mapoly0093s0065 Marchantia polymorpha HOM05D002578 ORTHO05D005154 6.4e-06 53.9 75 40.0


User provided reference genes

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