Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G007240 Cucumis sativus L. HOM05D006964 ORTHO05D008861 2.1e-42 175.3 86 100.0
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 8.5e-28 126.7 83 84.3
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 2.5e-19 98.6 75 73.3
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 1.2e-18 96.3 67 71.6
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 8.0e-18 93.6 91 60.4
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 8.0e-18 93.6 68 73.5
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 5.2e-17 90.9 73 63.0
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 6.8e-17 90.5 85 62.4
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 1.2e-16 89.7 91 59.3
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 9.8e-16 86.7 78 60.3
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 1.3e-15 86.3 68 64.7
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 1.7e-15 85.9 65 67.7
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 2.2e-15 85.5 75 61.3
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 2.8e-15 85.1 66 68.2
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 3.7e-15 84.7 67 65.7
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 3.7e-15 84.7 78 61.5
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 3.7e-15 84.7 78 61.5
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 4.8e-15 84.3 90 54.4
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 4.8e-15 84.3 78 61.5
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 4.8e-15 84.3 66 68.2
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 1.1e-14 83.2 68 61.8
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 1.1e-14 83.2 79 59.5
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 1.1e-14 83.2 79 59.5
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 1.4e-14 82.8 84 56.0
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 1.8e-14 82.4 83 57.8
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 2.4e-14 82.0 65 69.2
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 1.2e-13 79.7 64 65.6
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 1.2e-13 79.7 67 62.7
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 2.0e-13 79.0 67 64.2
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 2.7e-13 78.6 71 67.6
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 4.5e-13 77.8 75 56.0
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 7.7e-13 77.0 67 62.7
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 1.0e-12 76.6 79 57.0
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 1.3e-12 76.3 90 53.3
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 1.3e-12 76.3 85 50.6
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 2.3e-12 75.5 70 55.7
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 5.0e-12 74.3 77 55.8
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 6.6e-12 73.9 70 57.1
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 8.6e-12 73.6 74 56.8
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 8.6e-12 73.6 63 61.9
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 8.6e-12 73.6 63 61.9
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 8.6e-12 73.6 81 48.1
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 8.6e-12 73.6 64 62.5
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 3.3e-11 71.6 104 42.3
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 5.5e-11 70.9 77 51.9
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 7.2e-11 70.5 83 49.4
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 9.5e-11 70.1 84 50.0
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 1.2e-10 69.7 102 47.1
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 1.6e-10 69.3 70 54.3
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 2.8e-10 68.6 63 57.1
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 3.6e-10 68.2 70 54.3
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 3.6e-10 68.2 90 45.6
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 4.7e-10 67.8 88 47.7
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 1.4e-09 66.2 70 52.9
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 1.4e-09 66.2 83 48.2
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 1.8e-09 65.9 67 55.2
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 1.8e-09 65.9 64 56.2
DCAR_005902 Daucus carota HOM05D006964 ORTHO05D008861 2.3e-09 65.5 77 48.1
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 4.0e-09 64.7 103 39.8
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 5.2e-09 64.3 63 57.1
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 5.2e-09 64.3 79 50.6
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 5.2e-09 64.3 78 50.0
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 8.9e-09 63.5 62 58.1
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.5e-08 62.8 77 50.6
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 2.0e-08 62.4 78 48.7
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 2.0e-08 62.4 63 55.6
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 2.0e-08 62.4 67 52.2
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 3.4e-08 61.6 70 48.6
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 5.7e-08 60.8 62 54.8
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 5.7e-08 60.8 62 54.8
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 5.7e-08 60.8 60 53.3
SalBow7G3142 Salvia bowleyana HOM05D006964 ORTHO05D008861 5.7e-08 60.8 70 48.6
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 1.7e-07 59.3 82 42.7
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 1.7e-07 59.3 89 47.2
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 1.7e-07 59.3 88 45.5
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 1.7e-07 59.3 88 45.5
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 2.2e-07 58.9 70 47.1
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.8e-07 58.5 93 43.0
Migut.M00128 Erythranthe guttata HOM05D006964 ORTHO05D008861 3.7e-07 58.2 68 47.1
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 6.3e-07 57.4 62 50.0
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 8.3e-07 57.0 97 41.2
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 1.1e-06 56.6 62 48.4
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 1.1e-06 56.6 62 48.4


User provided reference genes

Program Settings