Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 0.0e+00 1327.0 693 100.0
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 0.0e+00 1157.1 624 97.0
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 0.0e+00 1100.5 700 83.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 0.0e+00 1085.5 701 84.2
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 7.1e-234 814.3 714 64.4
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 6.7e-232 807.7 709 64.2
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.7e-231 804.7 711 63.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 3.7e-230 802.0 712 64.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.8e-230 801.6 712 64.7
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.6e-225 786.6 731 62.7
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.8e-224 783.1 722 62.5
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 6.7e-224 781.2 714 62.7
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 4.8e-222 775.0 714 61.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.2e-220 770.4 715 61.0
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.4e-220 768.8 709 61.6
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.3e-219 766.9 722 61.2
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.9e-219 765.8 710 61.3
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.9e-219 765.8 710 62.1
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.2e-218 762.3 718 61.1
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.4e-218 760.8 711 61.5
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.2e-217 760.4 707 60.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 1.4e-216 756.9 711 60.2
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.3e-216 756.1 710 61.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 8.2e-214 747.7 716 59.6
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.8e-213 746.5 714 59.7
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.8e-213 746.5 716 60.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.1e-213 744.2 729 58.6
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 9.1e-213 744.2 733 59.2
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-212 743.8 695 60.7
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.0e-212 743.0 713 59.3
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.9e-212 741.5 713 59.7
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 8.5e-211 737.6 714 59.7
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 8.5e-211 737.6 712 59.8
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.1e-210 737.3 715 59.9
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.9e-210 736.5 704 60.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.9e-210 736.5 710 58.0
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 5.5e-210 734.9 698 59.3
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 7.2e-210 734.6 696 61.1
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 8.0e-209 731.1 721 58.1
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.0e-208 730.7 711 58.5
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 1.4e-208 730.3 715 58.9
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 3.0e-208 729.2 712 59.6
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 6.7e-208 728.0 735 58.9
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 7.4e-207 724.5 721 58.4
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.8e-206 722.6 711 58.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.8e-206 722.6 699 58.5
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 3.1e-205 719.2 706 58.8
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 3.1e-205 719.2 724 57.7
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 4.1e-205 718.8 713 57.9
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 9.1e-205 717.6 710 58.6
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.2e-204 717.2 709 56.8
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.2e-204 717.2 711 58.2
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 2.6e-204 716.1 726 57.9
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.6e-204 716.1 709 58.5
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 3.5e-204 715.7 707 57.7
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.5e-204 715.3 709 58.7
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-203 713.8 709 58.7
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.3e-203 713.8 712 57.4
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.9e-202 709.9 720 58.1
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.6e-201 706.8 711 57.2
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.1e-201 706.4 717 57.6
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.0e-200 702.2 709 58.3
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 6.7e-200 701.4 708 55.9
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.0e-199 699.9 705 57.6
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 2.6e-199 699.5 711 57.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 5.7e-199 698.4 702 56.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-198 697.2 709 56.6
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.7e-198 696.8 706 56.9
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.8e-198 696.0 708 56.9
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 2.4e-197 693.0 708 55.6
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.1e-197 692.6 705 54.6
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 1.6e-196 690.3 708 56.6
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.0e-196 689.9 709 56.1
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 2.7e-196 689.5 705 56.0
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 5.9e-196 688.3 715 56.8
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 5.9e-196 688.3 706 56.9
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 6.5e-195 684.9 719 55.9
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.5e-194 683.7 700 57.7
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.9e-194 683.3 710 56.5
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.9e-194 683.3 710 56.5
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 4.2e-194 682.2 710 56.5
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 2.1e-193 679.9 711 56.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 4.7e-193 678.7 712 55.9
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 8.0e-193 677.9 711 55.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.8e-192 676.8 716 55.7
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 3.0e-192 676.0 709 57.0
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.8e-192 674.9 701 57.2
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.2e-191 674.1 710 55.8
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 1.5e-191 673.7 704 55.4
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 3.4e-191 672.5 711 54.6
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.8e-190 669.5 710 55.2
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.4e-189 666.4 714 55.5
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.0e-188 663.3 711 53.9
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.5e-188 662.5 715 55.7
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.6e-185 653.7 714 53.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 6.8e-184 648.3 715 53.8
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 2.4e-181 639.8 707 53.3
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.0e-181 638.3 865 45.4
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 7.8e-180 634.8 728 53.6
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 7.8e-180 634.8 707 53.5
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.3e-179 634.0 720 53.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.7e-179 633.6 716 52.9
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 9.5e-178 627.9 716 53.5
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.0e-176 624.4 725 52.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.0e-175 620.2 713 52.5
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.7e-174 615.9 719 54.0
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 6.4e-174 615.1 719 53.0
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.4e-173 614.0 717 53.0
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.4e-173 613.2 719 51.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.6e-172 609.0 705 52.6
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.2e-169 600.9 743 50.2
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 8.0e-169 598.2 733 51.3
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 8.3e-166 588.2 710 50.8
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-164 584.3 708 50.4
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.3e-163 580.9 722 49.6
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.9e-162 577.0 724 48.5
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.6e-161 573.9 717 49.0
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 8.9e-160 568.2 695 51.5
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.0e-159 567.0 695 51.7
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.6e-159 566.6 711 50.1
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 9.9e-159 564.7 327 89.3
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.1e-152 544.7 715 49.2
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 3.8e-150 536.2 713 48.5
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.5e-138 497.7 380 69.7
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.3e-134 484.6 739 45.7
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.7e-134 484.2 731 44.6
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.4e-134 481.9 370 68.9
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.7e-129 466.5 374 65.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.7e-129 466.5 374 65.5
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 3.5e-124 449.9 599 47.4
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-122 444.9 699 44.9
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 3.8e-118 429.9 321 71.7
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.1e-117 428.3 322 72.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.9e-109 401.0 543 48.1
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 4.1e-104 383.3 736 39.5
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.4e-96 357.5 721 37.7
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.2e-93 346.7 769 36.8
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.2e-92 345.1 721 36.6
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 6.5e-86 322.8 392 50.0
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 2.5e-85 320.9 397 51.4
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.2e-82 312.0 491 43.6
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 3.7e-73 280.4 391 44.8
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-72 277.7 627 36.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.1e-60 238.0 404 42.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 2.9e-57 227.6 483 35.8
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.7e-55 221.1 441 35.4
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-55 220.7 151 77.5
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-46 191.0 353 40.8
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 8.9e-43 179.5 351 39.3
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.6e-42 176.4 152 57.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.2e-40 171.0 191 48.7
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.4e-33 146.7 179 49.7
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 5.4e-32 143.7 166 52.4
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.6e-31 140.6 381 30.7
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.9e-29 135.2 265 37.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.6e-28 132.1 358 32.1
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-25 122.5 69 85.5
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.2e-25 121.7 69 87.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.2e-23 115.9 451 26.6
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.2e-20 103.6 57 93.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.9e-19 100.1 62 79.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.0e-18 98.6 81 54.3
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-17 95.9 93 53.8
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 2.9e-17 94.7 50 92.0
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.4e-17 93.6 93 52.7
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 3.2e-16 91.3 50 88.0
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.3e-13 80.9 421 26.1
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 2.8e-12 78.2 56 69.6
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.1e-12 76.6 155 39.4
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.2e-09 68.6 106 36.8
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.1e-08 63.5 46 65.2


User provided reference genes

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