Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.6e-97 359.4 175 100.0
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 6.0e-97 357.5 175 98.3
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.0e-93 344.7 175 94.3
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-88 328.9 175 90.9
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 6.5e-83 310.8 175 85.1
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-69 266.2 176 72.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.2e-66 254.2 197 64.5
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 9.4e-66 253.8 175 68.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.6e-65 253.1 174 69.0
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 6.1e-65 251.1 197 63.5
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 8.0e-65 250.8 175 68.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.0e-64 250.4 177 68.4
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.4e-64 250.0 174 67.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.4e-64 250.0 174 69.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-64 250.0 174 67.8
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-64 250.0 174 69.5
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.4e-64 250.0 183 66.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.8e-64 249.6 185 65.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.3e-64 249.2 174 68.4
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.0e-64 248.8 175 66.9
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 3.9e-64 248.4 183 64.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.7e-64 247.7 174 68.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.7e-64 247.7 177 67.2
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.8e-64 247.3 177 67.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.0e-63 246.1 185 65.9
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.3e-62 243.4 172 66.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 3.7e-62 241.9 177 68.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 4.8e-62 241.5 181 68.5
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 4.8e-62 241.5 177 67.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.1e-61 240.4 200 62.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.3e-61 238.0 182 64.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.0e-60 236.1 177 65.5
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.5e-60 235.0 176 63.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.5e-58 229.9 177 61.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.9e-58 229.6 204 56.4
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 4.2e-58 228.4 175 64.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 4.2e-58 228.4 175 63.4
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.2e-58 227.6 175 61.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.2e-57 226.9 175 61.7
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.2e-57 226.9 177 64.4
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.1e-57 226.1 180 63.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-57 225.3 203 55.7
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.0e-56 223.8 172 61.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 8.8e-56 220.7 176 61.4
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.4e-55 218.4 177 59.9
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 9.8e-55 217.2 131 72.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.3e-54 216.9 174 59.8
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 6.3e-54 214.5 174 59.8
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-53 213.8 172 59.9
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.1e-53 213.8 176 58.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.1e-53 213.8 176 58.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.1e-53 213.8 173 56.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-53 213.4 174 59.8
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-53 213.4 174 58.6
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.4e-53 212.6 197 52.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.4e-53 212.6 177 57.6
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.1e-53 211.8 174 61.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 9.1e-53 210.7 174 57.5
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-52 209.9 174 58.6
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.6e-52 209.9 174 58.0
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.6e-52 209.9 174 58.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.7e-52 209.1 175 57.1
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.5e-52 208.8 167 59.9
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 7.7e-52 207.6 174 59.2
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.7e-51 206.5 113 79.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.5e-51 204.1 120 74.2
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.9e-50 203.0 177 54.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.2e-50 202.2 177 54.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 7.2e-50 201.1 174 58.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-49 200.3 131 65.6
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.2e-49 200.3 174 56.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.1e-49 199.5 174 54.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-49 199.1 127 69.3
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 4.7e-49 198.4 158 60.1
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.7e-49 198.4 162 61.1
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 6.1e-49 198.0 170 58.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-49 197.6 177 53.1
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-49 197.6 177 53.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 8.0e-49 197.6 174 57.5
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.0e-48 197.2 158 58.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.8e-48 196.4 114 74.6
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.8e-48 196.4 168 56.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.3e-48 196.1 123 70.7
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 5.2e-48 194.9 173 53.8
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 6.8e-48 194.5 174 56.9
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.4e-47 192.2 163 55.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.4e-47 191.8 166 56.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.7e-47 191.4 174 51.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.7e-47 191.4 131 64.9
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 5.7e-47 191.4 174 52.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.7e-47 191.4 175 56.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.5e-47 191.0 174 51.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 4.9e-46 188.3 160 61.2
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 4.9e-46 188.3 160 61.2
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 4.9e-46 188.3 160 61.2
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 4.9e-46 188.3 160 61.2
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.3e-46 188.0 176 52.8
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.3e-46 188.0 114 69.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 8.3e-46 187.6 176 54.0
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.4e-45 186.0 160 60.6
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.4e-45 186.0 160 60.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.1e-45 185.3 160 60.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.1e-45 185.3 122 66.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.4e-45 184.9 174 55.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-44 183.7 168 51.8
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 5.9e-44 181.4 160 58.1
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.3e-43 180.3 178 49.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.7e-43 179.9 130 64.6
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.9e-43 179.1 160 57.5
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.8e-43 178.7 160 56.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.8e-43 178.7 160 56.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.8e-43 178.7 160 56.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.8e-43 178.7 185 51.4
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.8e-43 178.7 160 57.5
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.6e-43 177.9 132 59.8
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 8.6e-43 177.6 161 55.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.3e-42 175.6 163 51.5
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.2e-42 174.5 121 63.6
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 114 64.9
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.1e-41 172.9 131 62.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 3.6e-41 172.2 174 50.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.7e-41 171.8 114 64.0
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 8.0e-41 171.0 168 51.8
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.8e-40 169.9 167 50.9
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.9e-40 167.5 114 60.5
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.0e-39 166.4 116 61.2
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 3.4e-39 165.6 119 58.8
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.7e-39 164.9 122 56.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 5.7e-39 164.9 127 58.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 8.3e-38 161.0 137 50.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-37 160.6 122 55.7
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.8e-37 159.8 118 59.3
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-36 156.8 125 56.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.6e-36 155.2 120 59.2
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 4.6e-36 155.2 175 43.4
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.3e-35 152.9 125 57.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.0e-35 151.8 109 57.8
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.2e-33 147.1 133 53.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.7e-33 145.2 114 54.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-33 144.8 103 56.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.0e-32 144.1 128 53.9
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.8e-32 143.3 174 40.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.8e-32 141.4 170 38.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.4e-31 138.7 123 52.8
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.9e-30 135.2 110 60.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.2e-29 132.5 122 49.2
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 9.2e-29 131.0 97 57.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.2e-28 130.6 112 54.5
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.6e-28 130.2 109 57.8
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.5e-26 123.6 111 48.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.5e-26 122.9 96 56.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.3e-26 122.1 118 48.3
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-25 120.2 84 59.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-25 119.8 93 55.9
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.4e-23 112.1 118 48.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 4.4e-23 112.1 118 48.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 4.4e-23 112.1 116 44.8
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-22 110.2 125 44.8
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-22 110.2 107 49.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.7e-22 110.2 122 48.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.7e-22 110.2 118 44.1
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 9.2e-21 104.4 118 44.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.0e-19 100.9 125 45.6
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-19 100.5 76 56.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-19 99.4 77 54.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.5e-18 96.3 69 63.8
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-17 93.6 68 55.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 5.2e-16 88.6 145 37.2
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.9e-11 72.4 111 39.6
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.6e-10 68.6 42 64.3
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.6e-10 68.6 45 66.7
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.8e-08 63.5 72 43.1


User provided reference genes

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