Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 0.0e+00 2009.6 1005 100.0
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 0.0e+00 1851.6 1052 89.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 0.0e+00 1725.7 1054 83.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1436.0 1056 71.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1240.3 1049 64.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 7.1e-174 615.5 1077 39.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.6e-173 612.8 1104 38.5
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 5.3e-161 572.8 1103 37.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.8e-154 550.4 1107 36.4
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 6.2e-154 549.3 1087 36.9
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.2e-152 545.0 1072 36.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 9.9e-152 542.0 1110 36.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 6.4e-151 539.3 1059 37.8
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.4e-150 538.1 1095 36.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 7.9e-149 532.3 1067 37.9
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 7.9e-149 532.3 1102 36.2
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.8e-148 531.2 1104 35.9
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.3e-145 519.6 1167 34.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.4e-144 516.9 1155 34.6
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.2e-141 508.4 1097 35.6
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.6e-141 506.5 1067 35.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.0e-140 505.4 1110 35.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.1e-138 497.7 1064 34.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 3.7e-138 496.9 1095 35.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.4e-137 495.0 1084 35.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.0e-135 488.8 1089 35.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.2e-130 471.1 1089 34.5
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 6.9e-129 466.1 1042 34.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-127 461.5 1093 33.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.1e-126 458.8 1089 33.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 9.4e-126 455.7 1032 34.2
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 6.7e-124 449.5 1108 34.1
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.5e-123 447.6 1096 33.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 7.4e-123 446.0 1093 33.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.8e-122 444.1 1097 33.1
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.7e-122 443.7 1076 32.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.7e-122 443.7 1090 32.5
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 4.5e-120 436.8 1033 34.3
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.0e-119 435.6 1094 33.1
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.7e-119 434.9 1100 32.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.1e-117 427.9 1117 32.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 5.7e-115 419.9 1040 33.4
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 6.5e-111 406.4 1076 32.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-111 406.0 1041 32.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.7e-109 401.0 1044 33.6
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.4e-108 398.7 1041 33.4
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.8e-108 398.3 1047 33.3
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.3e-108 397.9 1040 32.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.5e-107 395.2 1040 33.0
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.5e-107 395.2 1066 31.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.6e-107 394.4 1068 31.5
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.7e-107 393.3 1187 30.6
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.3e-106 392.1 1040 33.8
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.1e-105 389.0 1119 31.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 9.1e-105 386.0 1179 29.6
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.5e-104 383.6 1074 30.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.2e-103 381.3 1047 30.4
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.9e-103 380.9 1087 29.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.8e-103 380.6 1067 29.8
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.9e-102 378.3 1060 31.0
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-100 372.1 1085 30.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 9.1e-97 359.4 1057 30.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.7e-96 357.8 1077 30.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.3e-95 355.5 1175 29.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.2e-95 354.8 1118 29.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 8.5e-95 352.8 1121 30.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.5e-95 352.8 905 32.9
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.5e-94 351.3 1090 30.4
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.2e-93 349.0 1044 30.8
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-91 342.0 791 35.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 4.4e-91 340.5 1014 31.5
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 7.5e-91 339.7 1071 30.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.1e-89 335.9 1164 27.9
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.0e-88 331.6 1041 29.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.6e-87 326.6 1039 32.0
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.5e-86 325.5 1015 30.6
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.8e-83 312.8 1014 28.9
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.7e-82 312.0 573 37.0
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 4.9e-82 310.5 1010 30.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.0e-79 302.8 1008 30.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 6.8e-76 290.0 793 31.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-75 288.1 1028 29.8
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 3.7e-74 284.3 990 30.0
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.9e-73 282.0 718 33.7
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.4e-73 281.6 995 30.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 4.1e-73 280.8 991 29.5
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 5.4e-73 280.4 718 33.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 5.4e-73 280.4 718 33.7
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 9.5e-70 269.6 736 33.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.4e-65 255.0 659 32.6
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.5e-64 251.1 411 41.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.4e-57 229.2 720 29.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.5e-54 219.2 682 30.5
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.8e-50 204.5 286 42.0
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.6e-48 199.1 934 24.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.0e-47 196.4 1113 24.3
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 2.3e-47 195.3 494 32.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.1e-44 186.4 779 28.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-42 179.1 510 30.8
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.2e-41 174.9 975 25.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 7.9e-40 170.2 261 37.9
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 8.7e-39 166.8 673 26.0
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-37 162.9 168 50.0
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.2e-37 160.6 688 25.1
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.8e-36 159.1 1014 24.6
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.1e-33 149.8 798 26.2
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.4e-33 147.5 153 49.7
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 7.1e-33 147.1 284 36.3
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 9.3e-33 146.7 779 27.5
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-31 142.5 480 29.8
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.0e-31 141.7 752 26.5
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.7e-31 140.2 383 31.3
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.3e-30 138.3 774 24.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.6e-30 137.5 772 26.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 3.8e-26 124.8 153 45.1
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 4.2e-25 121.3 973 21.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 7.1e-25 120.6 501 29.7
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-24 119.8 150 46.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.6e-24 119.4 137 45.3
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.7e-24 118.6 157 40.1
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-24 118.6 159 41.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 6.0e-24 117.5 156 42.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.7e-23 113.6 147 40.1
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-22 113.2 129 47.3
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 9.6e-22 110.2 763 24.2
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.6e-21 109.4 445 25.6
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.8e-21 108.6 110 48.2
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 8.2e-21 107.1 141 42.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.4e-20 105.5 201 34.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.4e-20 105.5 125 43.2
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.0e-18 97.8 290 28.6
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 4.2e-17 94.7 299 30.1
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 7.9e-16 90.5 311 28.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.3e-15 89.0 315 26.7
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 6.7e-15 87.4 91 50.5
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.9e-14 85.9 447 24.6
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 7.4e-14 84.0 451 26.4
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 9.7e-14 83.6 454 25.8
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.5e-09 68.9 104 39.4
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 5.5e-09 67.8 64 48.4
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.4e-09 67.0 94 38.3
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.6e-08 65.1 110 36.4
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.0e-07 63.5 239 26.8
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 6.7e-07 60.8 765 21.7


User provided reference genes

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