Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 0.0e+00 1224.9 621 100.0
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 0.0e+00 1203.3 622 98.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 0.0e+00 1182.2 621 95.8
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 0.0e+00 1151.3 621 92.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.1e-301 1038.5 617 83.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.3e-300 1035.0 622 83.4
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.3e-298 1029.2 630 82.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.4e-297 1025.8 621 82.1
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 621 82.9
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 621 83.7
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.1e-297 1024.2 625 82.6
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.1e-297 1024.2 627 82.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.9e-297 1023.5 622 81.4
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 6.9e-297 1023.5 626 82.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 9.1e-297 1023.1 622 81.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 623 82.5
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 623 81.5
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 573 87.3
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 628 80.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 6.5e-295 1016.9 626 81.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 580 86.0
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 6.1e-293 1010.4 558 87.8
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 625 81.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 622 80.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 570 86.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 621 81.2
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.2e-292 1007.3 622 81.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 6.7e-292 1006.9 621 80.2
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 638 79.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.0e-291 1005.4 658 78.1
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 576 85.6
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 626 80.0
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 626 81.0
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 626 81.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 621 80.4
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 621 80.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 622 80.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 621 81.2
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 7.4e-291 1003.4 624 79.8
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 9.7e-291 1003.0 582 83.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 621 81.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.7e-290 1002.3 622 80.4
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-290 1001.9 627 79.7
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.2e-290 1001.9 624 80.8
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 618 80.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.1e-289 999.6 621 80.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.4e-289 999.2 621 80.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.4e-289 998.4 621 80.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.1e-289 998.0 564 85.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-288 996.1 622 80.1
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.6e-288 995.7 625 80.8
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 4.5e-288 994.2 581 84.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 4.5e-288 994.2 623 80.4
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 7.7e-288 993.4 611 82.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 7.7e-288 993.4 620 80.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 581 83.5
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.0e-287 990.7 621 79.5
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.9e-286 988.8 623 79.9
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.5e-286 988.4 621 79.1
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.5e-286 988.4 581 83.1
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.2e-286 987.6 621 79.4
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.2e-286 987.6 574 85.7
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 629 78.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 5.5e-286 987.3 625 79.2
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 621 80.8
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.6e-285 985.7 611 80.7
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.6e-285 985.7 628 79.0
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 3.6e-285 984.6 621 80.7
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 6.1e-285 983.8 610 80.7
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.0e-284 983.0 606 80.7
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.4e-284 982.6 621 79.5
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.8e-284 982.2 604 81.3
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.3e-284 981.9 607 80.2
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.0e-284 981.5 624 80.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 6.7e-284 980.3 621 79.9
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.7e-284 980.3 606 80.4
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-283 979.5 618 79.9
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.0e-283 978.8 622 78.8
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.3e-282 976.1 558 84.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.2e-282 975.3 593 81.5
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 2.8e-282 974.9 621 79.2
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.8e-282 974.9 571 84.1
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.3e-282 973.8 655 75.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 6.3e-282 973.8 608 80.6
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 6.3e-282 973.8 622 79.6
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 8.2e-282 973.4 608 80.4
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 8.2e-282 973.4 608 80.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.4e-281 972.6 558 84.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.4e-281 971.8 581 82.4
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 4.1e-281 971.1 622 79.6
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.2e-280 969.5 621 79.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.2e-280 969.5 621 79.2
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 5.9e-280 967.2 623 79.3
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.7e-279 965.7 621 78.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.8e-279 964.5 558 83.9
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 6.5e-279 963.8 621 78.7
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 8.5e-279 963.4 621 78.7
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 8.5e-279 963.4 609 79.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.1e-278 963.0 599 80.8
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.5e-278 961.8 609 79.5
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 4.2e-278 961.1 643 77.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.6e-277 958.0 586 80.5
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 3.6e-277 958.0 590 80.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.4e-276 956.1 569 83.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 5.2e-276 954.1 647 74.5
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.5e-275 952.6 635 76.9
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.4e-273 944.1 637 73.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 5.4e-273 944.1 619 75.1
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.2e-272 943.0 527 87.1
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.5e-272 941.0 564 80.5
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.9e-272 940.6 653 74.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.1e-265 919.8 600 75.3
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.1e-265 918.3 575 80.0
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.0e-263 913.3 591 76.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-260 902.9 621 72.6
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.0e-260 901.7 529 83.9
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.7e-256 888.6 583 74.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.6e-256 887.9 576 78.3
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 9.5e-254 880.2 539 80.5
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.0e-249 864.0 527 80.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.5e-246 855.5 633 70.6
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.4e-244 849.7 625 69.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.6e-235 817.4 585 71.8
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.7e-232 808.9 572 69.6
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.6e-232 808.1 557 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.9e-225 786.2 495 77.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.1e-223 778.1 489 77.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.1e-221 772.7 490 79.4
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 9.0e-220 767.3 492 79.3
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.5e-214 749.2 433 84.1
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.5e-214 749.2 545 66.8
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.4e-209 733.4 426 83.3
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.7e-208 729.2 490 76.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.9e-206 723.0 433 79.9
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.8e-202 708.8 440 79.5
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.4e-198 694.5 573 60.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.3e-189 667.2 403 82.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 6.3e-173 611.7 433 72.5
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.7e-163 579.7 588 51.9
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.8e-157 559.7 312 89.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.7e-149 532.7 384 73.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.1e-127 459.9 340 72.4
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.2e-123 448.0 296 78.4
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 5.6e-105 386.0 277 68.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.3e-95 352.8 216 79.6
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 7.7e-78 295.8 212 74.1
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.7e-75 287.3 557 34.1
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.3e-73 280.0 197 73.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.7e-67 260.0 150 81.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.6e-59 235.0 131 84.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 8.2e-56 222.6 133 77.4
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 3.5e-54 217.2 126 83.3
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.9e-53 214.2 116 93.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 7.2e-52 209.5 178 65.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.6e-49 201.1 109 88.1
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 4.4e-49 200.3 114 78.9
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 5.7e-49 199.9 115 81.7
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.1e-44 185.7 115 75.7
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-44 185.7 105 81.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.9e-44 184.9 145 65.5
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 6.8e-42 176.4 249 46.6
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.4e-39 167.9 157 60.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 4.5e-38 163.7 229 45.4
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 9.5e-36 156.0 153 57.5
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.0e-26 125.9 112 61.6
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 2.0e-25 121.7 60 93.3
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 5.8e-25 120.2 71 76.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.7e-21 108.6 212 34.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.9e-20 105.1 56 91.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.7e-16 92.0 88 55.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.2e-16 91.7 182 31.9
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 7.3e-12 76.6 66 51.5
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 8.1e-11 73.2 82 56.1


User provided reference genes

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