Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.3e-245 852.8 487 100.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.2e-235 819.7 487 95.9
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 6.0e-219 764.2 489 91.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 9.0e-167 590.9 492 67.7
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 8.2e-160 567.8 490 66.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 5.0e-157 558.5 493 66.5
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.6e-155 552.0 487 71.5
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.0e-154 550.8 502 66.1
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.3e-153 545.8 487 67.8
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.4e-153 545.4 475 64.2
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 9.7e-153 544.3 497 64.6
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 9.7e-153 544.3 487 67.6
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.7e-152 543.5 492 63.2
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.2e-152 543.1 488 65.2
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.8e-152 542.7 504 63.9
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.7e-152 542.3 493 66.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.9e-151 538.1 475 65.3
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.0e-150 536.6 490 62.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.0e-150 536.6 475 65.5
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.0e-150 536.6 485 68.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.4e-150 535.8 493 66.5
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.5e-148 528.5 486 67.9
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 9.4e-148 527.7 489 61.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.2e-147 527.3 491 67.0
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 8.8e-146 521.2 494 60.5
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.1e-145 520.8 487 66.3
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.6e-145 519.6 487 66.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 2.6e-145 519.6 492 61.0
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 3.3e-145 519.2 415 68.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.4e-145 518.8 492 59.6
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 9.7e-145 517.7 488 60.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.7e-144 516.9 492 60.6
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.2e-144 516.5 489 67.1
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.8e-144 516.2 483 69.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.8e-144 515.4 481 60.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.2e-144 514.6 486 60.5
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-143 513.5 497 59.6
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.1e-143 512.7 487 60.2
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.1e-143 512.3 489 62.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.6e-142 510.4 486 59.1
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.6e-142 510.4 486 60.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.9e-141 506.1 484 58.3
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.8e-141 505.8 479 60.1
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.0e-141 505.4 390 75.6
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 8.5e-141 504.6 505 59.8
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.1e-140 504.2 490 60.4
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.5e-140 503.8 483 60.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-140 503.4 488 62.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.2e-140 502.3 485 64.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 5.5e-140 501.9 488 63.5
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 7.2e-140 501.5 494 59.5
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.1e-139 500.0 490 67.3
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.1e-139 500.0 483 60.9
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.6e-139 499.2 483 65.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.7e-139 498.8 484 60.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.7e-139 498.8 512 57.6
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 2.3e-138 496.5 482 58.5
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 4.0e-138 495.7 494 60.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 5.2e-138 495.4 486 57.6
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 6.7e-138 495.0 484 65.5
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-137 494.2 488 60.7
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-137 493.8 484 65.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.6e-137 493.0 491 57.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.6e-137 493.0 485 64.9
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.4e-137 492.3 495 59.4
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.7e-137 491.9 486 64.6
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 5.7e-137 491.9 489 57.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 7.5e-137 491.5 475 57.9
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.2e-136 490.0 490 57.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.8e-136 489.6 484 64.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 3.7e-136 489.2 490 59.8
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 6.3e-136 488.4 486 62.6
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 6.3e-136 488.4 388 71.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 8.2e-136 488.0 489 56.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.1e-135 487.6 482 58.7
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.1e-135 487.6 491 57.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-135 487.3 491 58.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 2.4e-135 486.5 484 62.6
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.1e-135 486.1 491 59.3
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.3e-135 485.3 492 56.7
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.3e-135 485.3 485 60.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.2e-134 484.2 496 61.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-134 483.8 484 64.0
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 2.0e-134 483.4 483 55.5
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.7e-134 483.0 485 57.7
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.5e-134 482.6 493 59.8
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.5e-134 482.3 497 60.0
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 5.9e-134 481.9 457 58.0
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.9e-133 479.6 488 59.8
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.5e-133 478.4 462 60.2
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.1e-132 477.6 501 62.3
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-132 477.2 420 62.1
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.5e-132 477.2 488 59.8
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.5e-132 476.5 485 60.0
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 5.5e-132 475.3 490 56.5
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 7.2e-132 474.9 505 55.8
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 9.4e-132 474.6 487 56.3
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.1e-131 473.4 519 54.3
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 2.7e-131 473.0 488 57.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.7e-131 472.2 487 57.3
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 4.7e-131 472.2 491 58.5
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.0e-130 471.1 492 56.9
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.8e-130 470.3 498 56.0
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.0e-130 469.5 478 61.5
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 5.2e-130 468.8 495 60.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 5.2e-130 468.8 492 59.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.2e-129 467.6 479 59.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-129 467.2 485 61.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.0e-129 466.8 484 61.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.0e-129 466.8 483 62.7
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.0e-129 466.8 487 60.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 7.5e-129 464.9 487 57.1
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.3e-128 464.2 483 61.3
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.3e-128 464.2 478 61.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.7e-128 463.8 482 62.4
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-128 463.4 478 61.5
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.8e-128 463.0 488 56.4
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 3.7e-128 462.6 479 61.2
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.7e-128 462.6 495 54.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.7e-128 462.6 504 53.8
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 4.8e-128 462.2 504 55.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.4e-127 459.9 407 61.7
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.1e-127 459.1 459 61.9
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 5.4e-127 458.8 492 55.7
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 9.1e-127 458.0 490 58.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 7.7e-126 454.9 493 58.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 3.8e-125 452.6 504 53.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-123 447.6 486 59.5
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-123 447.6 402 62.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-123 447.2 488 59.0
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 6.1e-123 445.3 487 54.4
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-121 440.7 482 61.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.0e-121 440.3 421 60.8
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.4e-121 439.5 487 49.1
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.8e-120 436.4 456 59.9
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.7e-120 436.0 414 55.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-119 434.5 478 58.8
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.9e-118 428.7 313 70.6
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 4.3e-116 422.5 491 49.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 7.5e-113 411.8 392 55.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 6.4e-112 408.7 383 63.4
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 3.2e-111 406.4 463 52.3
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-108 396.0 264 74.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 4.3e-108 396.0 409 56.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 9.2e-103 378.3 499 50.1
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.2e-96 357.1 497 43.5
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.7e-96 356.3 382 53.4
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.2e-88 330.5 479 52.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.0e-85 320.1 487 45.0
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-83 314.7 341 49.6
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 9.0e-82 308.5 466 39.5
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.5e-60 238.0 359 42.9
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 3.9e-53 213.4 195 76.4
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.1e-52 211.8 191 61.3
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 3.7e-51 206.8 201 55.7
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 3.2e-47 193.7 361 34.6
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 9.1e-42 175.6 373 38.1
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 6.1e-38 162.9 117 65.8
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 5.3e-34 149.8 275 34.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.5e-31 141.0 99 68.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.2e-31 140.2 134 66.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.2e-29 133.3 129 66.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.4e-28 130.2 147 47.6
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.3e-27 128.6 129 62.8
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.8e-24 117.1 313 31.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.0e-24 116.7 99 59.6
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 3.2e-23 114.0 145 49.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.3e-20 104.0 193 35.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.3e-20 104.0 193 35.8
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.2e-19 101.3 276 28.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 4.7e-14 83.6 70 50.0
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.1e-14 83.2 325 31.1
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 3.3e-07 60.8 47 57.4


User provided reference genes

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