Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 0.0e+00 1802.3 940 100.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 0.0e+00 1509.6 886 87.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 0.0e+00 1306.6 904 77.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 0.0e+00 1075.1 824 70.3
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 9.9e-170 601.7 865 42.3
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.9e-166 589.7 795 44.9
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.1e-166 589.3 850 42.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 5.6e-165 585.9 847 44.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.0e-162 577.4 869 42.5
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 9.3e-160 568.5 829 42.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-155 555.1 811 42.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.7e-151 540.4 834 40.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.7e-151 540.4 865 41.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.5e-151 540.0 974 38.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.0e-150 538.5 843 40.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.1e-150 536.2 990 37.5
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.3e-149 533.1 843 40.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.3e-148 531.6 820 42.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.7e-148 530.0 810 41.6
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.8e-147 527.7 1027 37.1
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.6e-146 523.9 792 40.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.8e-146 522.7 865 40.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 9.9e-146 521.9 942 38.5
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-145 521.5 928 38.7
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.4e-144 517.3 848 40.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.5e-141 508.1 858 38.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.5e-141 507.3 858 38.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 2.5e-141 507.3 858 38.1
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.5e-141 507.3 838 38.2
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.3e-140 505.0 823 40.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.2e-140 502.7 826 41.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.4e-139 500.7 813 39.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 6.9e-139 499.2 792 40.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.6e-138 497.3 792 40.5
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 3.4e-138 496.9 800 40.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.7e-137 494.6 855 39.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.2e-137 494.2 835 39.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.2e-137 494.2 872 38.1
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.8e-137 493.4 821 38.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 6.5e-137 492.7 810 38.4
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-132 478.4 867 36.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 6.3e-132 476.1 829 38.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.0e-130 471.1 852 38.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.5e-130 469.9 811 37.7
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-129 468.0 980 35.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.7e-129 468.0 833 38.7
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.4e-128 464.9 836 36.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.9e-126 456.8 815 35.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 7.4e-125 452.6 773 39.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.8e-124 450.7 792 37.2
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.4e-123 448.4 818 36.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.3e-123 446.4 838 35.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.0e-121 442.2 835 35.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 5.0e-121 439.9 928 34.5
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.9e-120 438.0 568 44.2
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.2e-120 437.2 771 36.7
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 7.9e-119 432.6 817 36.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.6e-117 427.6 854 35.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.3e-116 422.9 821 35.7
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-115 422.2 834 33.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.1e-115 420.6 651 38.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 5.9e-114 416.4 816 34.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.0e-113 415.6 817 35.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.7e-113 414.8 813 33.5
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.5e-113 412.5 875 36.3
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.1e-112 412.1 817 35.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.2e-112 410.6 801 36.1
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.0e-110 405.6 817 33.7
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.8e-110 404.8 798 34.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.8e-110 402.5 663 42.1
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-108 396.4 878 32.9
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.4e-107 395.2 843 32.6
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.4e-107 394.4 799 35.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.1e-107 393.7 806 35.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.0e-107 392.9 831 32.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 9.1e-107 392.5 788 33.8
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.6e-106 391.7 829 32.3
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.9e-106 389.8 815 33.5
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 7.7e-106 389.4 807 34.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.0e-105 386.7 837 32.4
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.1e-104 385.6 813 35.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.6e-103 380.6 796 32.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 6.7e-102 376.3 734 37.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.0e-101 374.8 828 34.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.7e-101 373.2 818 32.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 9.1e-99 365.9 849 32.4
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-98 365.5 874 32.3
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.6e-98 365.2 785 32.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.5e-98 364.0 814 31.4
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.2e-96 357.5 843 33.3
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.4e-94 352.1 809 32.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-94 350.9 725 35.9
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 7.5e-93 346.3 803 33.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 7.0e-91 339.7 789 32.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 5.2e-86 323.6 850 30.4
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.9e-86 322.8 805 30.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.5e-85 319.7 562 38.1
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.5e-82 310.8 693 33.6
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 6.6e-81 306.6 491 37.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.6e-79 302.0 599 36.6
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.3e-78 298.1 468 40.6
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.5e-77 295.4 624 34.8
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 7.5e-77 293.1 512 37.1
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.9e-76 290.4 543 37.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.8e-74 283.1 459 38.1
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.0e-73 282.7 479 38.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.0e-73 281.2 484 37.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.9e-72 278.5 484 37.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.0e-71 273.1 470 38.1
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.0e-71 273.1 470 38.1
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 8.0e-71 273.1 776 29.6
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.8e-70 271.9 526 34.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.8e-70 270.0 847 27.5
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.8e-69 266.9 480 36.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.7e-68 264.2 469 36.5
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.3e-68 263.1 459 36.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-67 262.3 485 36.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 9.2e-67 259.6 557 31.4
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.2e-66 259.2 657 31.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 6.0e-66 256.9 444 36.0
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 3.0e-65 254.6 553 34.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.9e-65 254.2 821 27.9
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-64 252.7 468 35.7
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.8e-63 248.1 646 32.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.7e-63 247.3 432 37.5
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-62 246.1 548 33.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-62 246.1 562 31.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.1e-62 246.1 562 31.1
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.3e-62 245.0 610 32.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.0e-61 241.9 434 38.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.3e-60 239.2 802 28.2
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.5e-56 224.9 793 26.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-54 218.8 843 26.1
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.5e-48 199.1 686 28.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.5e-48 199.1 476 32.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.3e-48 196.8 426 32.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.1e-46 191.4 480 33.1
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.0e-45 188.7 410 34.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.8e-44 184.5 492 30.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.7e-41 175.6 292 41.8
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 6.9e-38 163.7 259 41.3
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.4e-35 155.2 354 30.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-34 151.8 832 23.8
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 3.3e-32 144.8 474 28.7
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.6e-29 133.7 194 46.9
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.5e-26 124.8 838 22.2
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 6.0e-26 124.0 467 23.8
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.1e-22 111.7 172 37.2
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.0e-22 111.3 87 56.3
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.2e-20 105.5 185 35.1
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.2e-19 101.3 136 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.9e-16 92.4 170 35.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.4e-14 86.3 97 45.4
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.9e-14 84.0 444 22.3
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-13 83.2 77 44.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-12 79.7 82 41.5
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.2e-11 75.1 84 42.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-09 68.6 101 32.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.1e-08 66.6 71 33.8
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 7.4e-08 63.9 64 40.6
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 6.3e-07 60.8 52 53.8
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 6.3e-07 60.8 62 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4740 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.1e-06 58.5 72 41.7
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 6.9e-06 57.4 60 41.7


User provided reference genes

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