Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 4.2e-106 388.3 229 100.0
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 5.1e-104 381.3 230 94.3
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.9e-103 379.4 230 98.7
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 2.8e-102 375.6 229 96.1
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.5e-95 352.4 229 89.1
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.1e-93 345.5 229 87.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 6.9e-93 344.4 229 89.5
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.0e-92 342.8 229 86.5
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.0e-92 342.8 230 86.1
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.4e-90 336.7 231 82.7
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 1.9e-90 336.3 230 87.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.7e-89 332.4 231 81.8
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.7e-89 332.4 230 81.7
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.6e-89 332.0 232 81.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.6e-89 332.0 232 81.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.6e-89 332.0 231 81.8
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.3e-88 329.3 230 82.2
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 3.0e-88 328.9 230 80.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 5.1e-88 328.2 233 80.3
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 5.1e-88 328.2 232 85.8
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 8.8e-88 327.4 231 81.0
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 8.8e-88 327.4 230 83.0
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.3e-87 325.5 230 85.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.3e-87 325.1 231 80.1
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.3e-87 325.1 230 80.0
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 5.7e-87 324.7 247 75.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.3e-86 323.6 231 83.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.7e-86 323.2 231 80.1
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.7e-86 323.2 231 81.0
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.2e-86 322.8 235 79.1
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.2e-86 322.8 230 86.5
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.2e-86 322.8 229 78.6
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.8e-86 322.4 231 83.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 3.7e-86 322.0 230 78.7
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 6.3e-86 321.2 231 82.7
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 6.3e-86 321.2 229 80.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 6.3e-86 321.2 233 81.1
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.1e-85 320.5 232 78.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-85 320.5 232 78.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.4e-85 320.1 232 78.0
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.4e-85 320.1 232 81.0
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.8e-85 319.7 232 81.0
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.4e-85 319.3 232 76.7
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.4e-85 319.3 230 78.7
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.4e-85 319.3 233 82.4
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 76.3
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 76.3
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 76.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 81.5
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 5.3e-85 318.2 231 82.3
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.9e-85 317.8 231 77.9
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 6.9e-85 317.8 232 76.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 77.6
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 76.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 76.3
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 77.6
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 75.9
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 2.6e-84 315.8 229 75.1
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 77.6
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.6e-84 315.8 231 78.8
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 81.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.4e-84 315.5 231 81.8
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 4.5e-84 315.1 230 84.3
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 4.5e-84 315.1 229 79.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 5.9e-84 314.7 232 77.2
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 5.9e-84 314.7 231 74.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 7.7e-84 314.3 232 77.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 7.7e-84 314.3 233 75.5
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 7.7e-84 314.3 232 75.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 7.7e-84 314.3 233 75.5
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.0e-83 313.9 236 79.2
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 1.3e-83 313.5 234 77.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 76.3
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.7e-83 313.2 230 75.7
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.7e-83 313.2 231 80.5
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.2e-83 312.8 230 78.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 75.4
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 75.4
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 5.0e-83 311.6 232 76.3
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.0e-83 311.6 233 79.0
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.0e-83 311.6 233 79.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 8.5e-83 310.8 232 78.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.5e-83 310.8 232 78.4
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.1e-82 310.5 232 81.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.1e-82 310.5 232 77.2
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.5e-82 309.3 232 81.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 3.2e-82 308.9 231 75.8
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 7.2e-82 307.8 230 72.6
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-81 306.6 232 74.6
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.1e-81 306.2 230 80.9
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.7e-81 305.8 230 82.6
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 7.9e-81 304.3 232 81.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.8e-80 303.1 232 74.1
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.0e-80 302.4 229 78.6
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.9e-80 302.0 234 82.1
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 3.9e-80 302.0 234 82.1
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.1e-79 300.4 230 72.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-79 300.4 231 75.3
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.5e-79 300.1 230 81.3
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 80.3
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 237 78.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.0e-79 299.7 233 76.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 4.4e-79 298.5 243 73.3
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 5.7e-79 298.1 229 74.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 9.7e-79 297.4 235 78.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.7e-78 296.6 233 73.0
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.7e-78 296.6 225 81.3
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.8e-78 295.8 229 70.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.8e-78 295.8 232 79.7
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.7e-78 295.4 233 69.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.8e-78 295.0 229 75.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.4e-77 292.7 233 76.4
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-76 290.4 229 75.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.6e-76 289.3 232 78.9
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.5e-76 288.5 231 78.8
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.1e-74 283.9 252 65.1
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.4e-74 283.5 230 72.2
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.2e-74 282.0 232 80.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 7.2e-74 281.2 230 76.5
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 9.4e-74 280.8 230 71.7
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-73 280.0 285 59.3
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.7e-73 279.3 232 67.2
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.6e-73 278.9 229 78.2
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.3e-72 276.2 229 77.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 3.9e-72 275.4 231 68.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.2e-72 275.0 216 77.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 5.2e-72 275.0 233 68.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 8.8e-72 274.2 233 69.5
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-71 273.9 229 77.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-71 273.9 229 77.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 3.3e-71 272.3 232 76.7
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.8e-69 266.5 229 75.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.0e-68 263.1 271 65.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 8.5e-67 257.7 230 73.5
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.2e-66 255.4 230 72.6
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 4.7e-65 251.9 229 64.6
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 5.2e-64 248.4 231 64.9
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.2e-57 227.3 186 74.2
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.2e-56 221.9 254 59.8
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.5e-55 220.3 189 70.9
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.0e-53 211.5 147 83.0
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.0e-51 207.6 237 59.5
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.0e-51 205.3 231 61.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.3e-50 202.6 146 80.1
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 5.5e-50 201.8 122 86.1
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.8e-48 196.8 121 84.3
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.4e-47 192.2 188 68.1
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 4.4e-47 192.2 233 54.9
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.0e-45 184.9 121 79.3
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.5e-44 182.6 112 83.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-44 182.2 112 83.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.0e-43 178.7 112 82.1
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.1e-42 177.6 244 50.8
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.0e-39 166.8 151 76.2
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 3.4e-39 166.0 122 73.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.2e-38 163.3 137 76.6
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.1e-32 142.9 96 78.1
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.2e-31 141.0 94 78.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-31 139.8 96 72.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.9e-27 125.9 70 87.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 4.3e-26 122.5 177 50.8
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 9.5e-26 121.3 70 84.3
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.4e-24 117.5 88 67.0
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 6.8e-24 115.2 229 42.8
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.8e-24 115.2 175 53.1
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 6.8e-24 115.2 71 80.3
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.9e-23 111.3 226 38.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-22 110.5 96 62.5
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.2e-21 106.3 97 58.8
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.8e-16 90.5 74 70.3
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.8e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.9e-14 83.2 56 73.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.3e-10 69.7 89 49.4
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.6e-10 68.2 92 48.9
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 9.6e-10 68.2 145 33.8
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 9.6e-10 68.2 72 51.4
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 4.9e-06 55.8 49 65.3


User provided reference genes

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