Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 0.0e+00 1692.2 1017 100.0
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 0.0e+00 1603.6 1017 93.8
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 0.0e+00 1471.4 1016 85.0
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1317.8 1016 78.5
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1312.7 1016 78.8
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.3e-278 961.4 1030 60.1
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 5.9e-277 958.0 1027 62.2
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 1.4e-275 953.4 1021 60.7
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.9e-268 929.1 1027 61.4
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 3.6e-266 922.2 1020 59.3
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.4e-265 920.2 1022 59.2
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 6.7e-265 917.9 1027 60.9
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 1.1e-264 917.1 1030 59.9
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.1e-262 910.6 1021 57.6
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.4e-262 910.2 1022 58.9
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 7.0e-262 907.9 1026 59.3
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 2.9e-260 902.5 1046 57.8
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 3.8e-260 902.1 1051 56.2
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.5e-259 899.4 1023 59.2
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 4.2e-259 898.7 1024 58.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 4.2e-259 898.7 1019 59.3
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.2e-256 890.6 1030 56.8
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 5.7e-256 888.3 1037 57.9
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 6.3e-255 884.8 1026 56.3
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 1.2e-253 880.6 1185 52.2
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 4.5e-253 878.6 1022 57.3
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 7.7e-253 877.9 1023 56.7
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1026 59.1
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.2e-252 876.3 1041 57.0
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.5e-251 873.6 1031 58.6
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 7.2e-251 871.3 1015 57.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 9.4e-251 870.9 1043 55.6
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 3.6e-250 869.0 1024 56.5
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 1.0e-249 867.5 1063 55.1
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.0e-249 865.9 1021 57.0
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.7e-248 861.7 1048 55.0
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 9.8e-248 860.9 1038 55.3
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.3e-247 860.5 1037 55.8
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 2.2e-247 859.8 1020 56.7
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.8e-247 858.6 1062 54.5
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 4.8e-247 858.6 1027 56.3
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 8.3e-247 857.8 1024 56.9
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.4e-246 857.1 1019 58.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 1.8e-246 856.7 1030 57.1
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 4.1e-246 855.5 1038 56.0
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 4.1e-246 855.5 1025 57.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.0e-245 853.2 1018 57.7
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 3.5e-245 852.4 732 69.8
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 3.5e-245 852.4 1023 58.6
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 7.7e-245 851.3 1019 56.2
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.7e-244 850.1 1022 56.8
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.0e-244 848.6 1034 56.1
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.9e-243 846.7 1041 56.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 9.5e-243 844.3 1025 58.2
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.6e-242 843.6 1032 56.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 4.7e-242 842.0 1019 57.0
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 4.7e-242 842.0 1055 54.6
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 4.7e-242 842.0 1051 55.3
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 1.4e-241 840.5 1020 56.7
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.8e-241 840.1 1013 55.2
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.8e-241 840.1 1025 54.3
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 3.0e-241 839.3 1021 55.5
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 6.8e-241 838.2 1020 56.3
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.0e-240 836.6 1020 56.4
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 7.5e-240 834.7 1043 56.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 7.5e-240 834.7 1051 55.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.8e-239 832.8 1024 56.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 6.3e-239 831.6 1027 54.9
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.4e-238 830.5 1028 56.3
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.4e-238 829.7 1026 54.4
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 2.9e-236 822.8 1050 55.1
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.5e-235 820.5 1020 54.1
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.6e-234 817.0 1024 56.5
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 6.1e-234 815.1 1026 56.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.0e-234 814.7 1018 54.4
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 8.0e-234 814.7 1023 56.1
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 8.0e-234 814.7 1016 53.8
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 8.0e-234 814.7 1052 54.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.8e-233 813.5 1100 51.8
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 2.3e-233 813.1 1050 53.3
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 5.2e-233 812.0 1025 55.3
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.5e-232 810.4 1011 54.6
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 5.8e-232 808.5 1031 56.0
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.9e-231 805.4 1053 54.7
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 7.0e-230 801.6 1013 54.5
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 7.8e-229 798.1 1020 57.3
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.7e-228 797.0 1150 48.3
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 8.6e-228 794.7 1011 53.5
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 1.9e-227 793.5 1029 55.2
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.5e-227 793.1 1041 53.4
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 1.2e-226 790.8 1024 53.1
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.6e-226 790.4 1028 52.9
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 2.8e-226 789.6 1025 53.8
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 5.8e-224 781.9 1016 53.6
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 4.9e-223 778.9 1031 54.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 8.3e-223 778.1 1034 52.7
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.1e-221 773.5 1033 52.6
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 6.0e-221 771.9 1166 47.7
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 6.0e-221 771.9 1002 52.9
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 2.5e-219 766.5 1025 52.8
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 9.5e-219 764.6 1021 51.8
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 6.2e-218 761.9 1038 51.4
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.3e-217 760.0 1015 53.7
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 3.1e-217 759.6 1033 52.6
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.4e-216 756.1 1018 52.5
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 8.3e-215 751.5 1057 50.3
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.4e-214 750.7 1031 51.9
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.7e-213 746.5 1019 53.9
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.6e-210 737.3 1027 51.8
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 5.2e-209 732.3 1016 51.8
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-206 724.5 1019 50.0
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.6e-205 720.7 1019 52.2
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.0e-201 706.1 1020 50.7
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 5.8e-200 702.2 1019 51.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 5.4e-190 669.1 1044 46.7
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 2.6e-184 650.2 1053 48.5
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 5.1e-180 636.0 1059 46.6
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 3.2e-174 616.7 1025 45.6
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.1e-169 601.7 1114 42.0
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.3e-167 594.7 481 75.3
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.0e-159 566.2 1031 44.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.3e-155 553.5 1031 41.9
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.0e-151 539.7 817 50.6
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 3.9e-148 530.0 939 44.0
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 4.0e-140 503.4 545 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 5.7e-139 499.6 705 51.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.6e-117 427.2 933 39.4
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 4.6e-96 357.1 1047 35.4
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 7.8e-96 356.3 391 57.5
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.0e-66 259.6 424 44.3
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 1.3e-61 242.7 553 39.4
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.1e-54 219.5 296 53.7
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 3.8e-50 204.5 137 86.1
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 4.8e-45 187.6 331 44.7
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 6.9e-44 183.7 322 41.3
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 9.4e-41 173.3 651 33.5
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.6e-40 171.4 163 60.7
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 2.2e-37 162.2 116 77.6
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.4e-36 158.7 88 97.7
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 6.1e-32 144.1 120 71.7
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 6.7e-31 140.6 429 36.4
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 4.8e-29 134.4 118 66.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 8.2e-29 133.7 512 32.0
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.1e-28 131.7 155 58.7
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 9.1e-28 130.2 482 33.2
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-26 125.6 87 78.2
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 6.5e-26 124.0 361 32.7
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 8.5e-26 123.6 211 44.1
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 2.5e-25 122.1 647 28.1
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 9.4e-25 120.2 575 29.7
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.3e-23 115.5 102 63.7
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-23 115.5 99 69.7
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 2.6e-22 112.1 421 31.6
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.6e-22 112.1 111 63.1
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.7e-22 110.9 81 77.8
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 9.8e-22 110.2 134 51.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.7e-21 109.4 485 28.5
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.7e-21 109.4 639 24.7
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 1.1e-20 106.7 154 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.4e-20 105.5 357 31.1
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 3.1e-20 105.1 84 71.4
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.6e-19 102.8 63 87.3
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.8e-18 98.2 240 34.6
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 2.7e-16 92.0 118 54.2
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.0e-15 90.1 89 62.9
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 4.0e-15 88.2 97 59.8
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.5e-14 86.3 60 80.0
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 7.5e-14 84.0 62 75.8
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 7.5e-14 84.0 62 75.8
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 2.2e-13 82.4 66 69.7
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 2.8e-13 82.0 63 76.2
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 6.3e-13 80.9 185 39.5
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 1.6e-11 76.3 71 66.2
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.3e-10 72.4 63 69.8
MELO3C027912.2 Cucumis melo HOM05D000030 ORTHO05D000031 2.8e-08 65.5 40 80.0
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-07 62.8 79 50.6
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 3.0e-07 62.0 45 68.9
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 1.2e-06 60.1 54 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 5.7e-06 57.8 318 23.9
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 5.7e-06 57.8 44 65.9


User provided reference genes

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