Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 1.0e-160 570.1 306 100.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 3.6e-145 518.5 306 93.5
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 7.8e-124 447.6 308 80.5
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.0e-123 447.2 306 82.0
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.1e-122 443.7 313 80.2
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 7.8e-92 341.3 332 61.4
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.9e-86 322.8 338 59.2
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.4e-86 321.6 326 60.1
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.2e-84 317.4 309 62.1
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.0e-83 312.8 311 60.1
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 6.6e-83 311.6 307 59.6
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 5.6e-82 308.5 331 55.9
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.2e-79 300.8 326 56.4
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 3.4e-79 299.3 304 60.5
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.6e-79 298.1 312 56.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 9.9e-79 297.7 332 55.1
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.3e-78 297.4 309 57.6
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.8e-78 295.8 310 56.8
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.9e-78 295.4 317 55.8
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 6.4e-78 295.0 319 55.5
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.4e-78 295.0 312 56.4
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 8.4e-78 294.7 327 55.4
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 8.4e-78 294.7 322 57.5
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 3.2e-77 292.7 333 55.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 4.2e-77 292.4 327 54.7
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 9.3e-77 291.2 325 55.1
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.6e-76 290.4 333 58.0
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 2.1e-76 290.0 317 54.9
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.7e-76 289.7 328 54.0
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.0e-75 286.2 384 49.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 9.6e-74 281.2 339 54.9
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.3e-73 280.8 319 54.5
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 2.8e-73 279.6 307 55.7
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 4.8e-73 278.9 375 49.6
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 8.1e-73 278.1 316 56.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.3e-72 275.4 339 53.4
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 6.9e-72 275.0 326 53.1
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 6.9e-72 275.0 311 55.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.9e-72 275.0 344 50.3
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.4e-71 272.7 280 57.1
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.5e-71 272.3 406 46.1
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.0e-70 271.2 347 52.4
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.2e-70 270.0 337 50.4
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 4.9e-70 268.9 348 50.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 6.4e-70 268.5 348 50.3
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.4e-69 267.3 307 53.7
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.9e-69 266.9 310 53.2
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.9e-69 266.9 338 52.4
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.6e-68 263.8 332 51.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.3e-67 260.8 332 50.0
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 2.3e-67 260.0 335 50.4
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 3.9e-67 259.2 309 54.0
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 5.1e-67 258.8 299 55.5
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 2.5e-66 256.5 313 53.0
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 3.3e-66 256.1 299 51.8
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 5.7e-66 255.4 323 52.3
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.8e-65 253.1 355 49.0
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.4e-64 250.8 307 53.4
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.8e-64 250.4 363 45.5
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 9.0e-64 248.1 352 47.7
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 9.0e-64 248.1 346 47.4
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 4.5e-63 245.7 329 49.8
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 2.2e-62 243.4 358 46.4
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.9e-62 242.3 307 49.2
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-61 241.1 340 47.1
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 5.5e-61 238.8 338 48.8
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 9.3e-61 238.0 330 48.2
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.1e-60 236.9 348 46.6
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.7e-57 226.1 271 52.8
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 8.2e-57 224.9 281 50.5
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.5e-55 220.7 280 49.6
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.0e-55 220.3 365 42.5
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 6.5e-54 215.3 371 43.4
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 1.9e-53 213.8 348 43.1
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 3.2e-53 213.0 390 41.5
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.2e-53 212.6 265 51.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.4e-53 211.5 290 49.7
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 2.7e-52 209.9 321 46.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.1e-48 198.0 315 43.2
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 2.4e-48 196.8 273 48.0
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 2.4e-48 196.8 273 48.0
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.6e-47 193.4 356 41.0
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 7.7e-47 191.8 392 37.2
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.0e-46 191.4 376 39.6
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.0e-46 191.4 325 41.5
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.8e-46 189.5 278 46.4
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 8.5e-46 188.3 276 46.7
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.1e-45 188.0 253 49.8
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.5e-45 186.8 228 51.8
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-45 186.8 282 47.2
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 4.2e-45 186.0 272 46.3
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 4.2e-45 186.0 272 46.3
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 2.7e-44 183.3 394 36.8
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 4.7e-44 182.6 374 40.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.0e-43 181.4 362 40.9
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 1.8e-43 180.6 269 44.6
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 5.1e-43 179.1 396 36.6
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 9.7e-42 174.9 258 47.3
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-41 173.3 174 60.9
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.7e-41 172.9 277 43.0
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 7.7e-39 165.2 292 45.9
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.9e-38 163.3 139 63.3
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.9e-37 160.6 158 60.8
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.0e-35 154.8 263 42.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.0e-35 154.8 199 48.7
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.3e-35 153.7 128 66.4
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.1e-34 151.4 311 38.6
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.7e-33 147.5 158 55.7
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.7e-33 147.5 264 40.5
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 3.5e-31 139.8 178 51.7
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 1.0e-27 128.3 236 39.0
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 3.0e-27 126.7 68 88.2
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 4.0e-27 126.3 137 57.7
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 5.2e-27 125.9 65 90.8
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 8.8e-27 125.2 324 36.1
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 2.7e-23 113.6 133 54.9
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.9e-23 112.5 112 64.3
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.9e-23 112.5 112 64.3
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.7e-22 110.9 105 66.7
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-19 100.1 67 71.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 8.8e-19 98.6 127 52.8
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.0e-18 97.4 139 46.0
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 1.8e-16 90.9 209 35.9
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.6e-14 82.4 143 38.5
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.1e-13 81.6 134 40.3
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 5.5e-13 79.3 118 39.0
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 8.3e-09 65.5 130 33.1
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.1e-08 65.1 134 35.1
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 7.0e-08 62.4 75 48.0
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-06 58.2 44 68.2
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-06 58.2 44 68.2


User provided reference genes

Program Settings