Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 2.5e-92 342.0 169 100.0
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.0e-88 330.1 169 96.4
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 3.6e-78 295.0 172 86.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 5.7e-60 234.6 166 72.3
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 3.6e-54 215.3 166 65.1
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 6.7e-53 211.1 155 65.8
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 1.2e-52 210.3 158 63.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.2e-51 206.1 160 63.1
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 6.3e-51 204.5 166 62.0
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 6.3e-51 204.5 166 60.8
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 8.3e-51 204.1 166 60.8
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 8.3e-51 204.1 159 62.9
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.8e-50 203.0 159 61.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 5.3e-50 201.4 156 63.5
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 5.3e-50 201.4 156 63.5
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 7.0e-50 201.1 166 58.4
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.2e-49 200.3 156 59.0
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.6e-49 199.9 155 62.6
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 4.5e-49 198.4 156 60.9
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.0e-48 197.2 153 59.5
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.3e-48 196.8 148 64.2
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 5.0e-48 194.9 159 61.0
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 8.5e-48 194.1 159 61.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 3.2e-47 192.2 156 59.6
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 3.2e-47 192.2 155 59.4
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 7.2e-47 191.0 155 58.1
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 1.2e-46 190.3 153 58.2
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 1.6e-46 189.9 154 59.7
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.1e-46 189.5 159 58.5
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 2.7e-46 189.1 160 59.4
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 3.6e-46 188.7 156 58.3
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 3.6e-46 188.7 157 56.1
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 4.7e-46 188.3 153 56.2
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 8.0e-46 187.6 153 59.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-45 187.2 148 58.1
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.4e-45 186.8 158 56.3
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 2.3e-45 186.0 151 61.6
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 3.0e-45 185.7 152 58.6
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 5.2e-45 184.9 155 55.5
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 6.8e-45 184.5 157 56.7
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.2e-44 183.7 152 59.2
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.5e-44 183.3 153 58.2
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.0e-44 183.0 152 59.2
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 2.6e-44 182.6 156 57.1
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 5.7e-44 181.4 156 53.2
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 7.5e-44 181.0 162 53.7
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 7.5e-44 181.0 155 56.8
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 9.8e-44 180.6 152 58.6
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.3e-43 180.3 152 59.2
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.7e-43 179.9 162 53.7
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 6.3e-43 177.9 152 55.3
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.1e-42 177.2 150 58.0
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 5.4e-42 174.9 152 57.2
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 5.4e-42 174.9 158 54.4
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 7.0e-42 174.5 155 53.5
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.2e-41 173.7 163 52.8
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 1.2e-41 173.7 156 57.7
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.2e-41 173.7 168 50.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.7e-41 172.6 155 54.8
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 5.9e-41 171.4 153 54.9
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.7e-40 169.9 156 50.6
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 2.3e-40 169.5 156 51.3
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 2.9e-40 169.1 156 51.3
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 3.8e-40 168.7 152 53.9
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 8.6e-40 167.5 145 53.1
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 4.2e-39 165.2 162 51.9
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 5.5e-39 164.9 157 52.2
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.2e-38 163.7 158 49.4
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.6e-38 163.3 158 50.0
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.8e-38 162.5 153 56.2
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 2.8e-38 162.5 152 52.6
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 4.7e-38 161.8 159 52.8
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 6.1e-38 161.4 152 52.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-37 159.8 159 52.8
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 3.0e-37 159.1 154 55.8
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 4.0e-37 158.7 152 55.9
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 8.9e-37 157.5 153 54.9
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.2e-36 157.1 148 50.7
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 1.5e-36 156.8 171 48.0
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.6e-36 156.0 153 54.2
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.4e-36 155.6 154 53.2
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.7e-35 153.3 151 51.7
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.8e-35 152.5 149 49.7
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.8e-34 149.8 140 50.7
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.4e-34 149.4 153 52.9
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 5.4e-34 148.3 156 50.6
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.2e-33 147.1 153 50.3
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-33 146.0 122 59.0
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 7.8e-33 144.4 119 54.6
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.7e-32 143.3 157 48.4
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 4.3e-31 138.7 153 45.8
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 5.6e-31 138.3 160 48.8
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 7.3e-31 137.9 160 48.1
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.2e-30 137.1 152 48.0
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.1e-30 136.3 153 46.4
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.8e-30 136.0 158 47.5
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 3.6e-30 135.6 149 48.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.6e-30 135.6 153 47.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 3.6e-30 135.6 152 48.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 4.7e-30 135.2 153 47.1
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 4.7e-30 135.2 153 47.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.0e-30 134.4 150 45.3
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 5.2e-29 131.7 152 43.4
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 8.9e-29 131.0 166 40.4
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.2e-28 130.6 124 51.6
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 3.4e-28 129.0 152 41.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.4e-26 121.7 152 46.7
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 1.0e-24 117.5 154 44.2
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 5.2e-21 105.1 159 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 3.4e-20 102.4 148 35.8
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 5.6e-15 85.1 133 36.8
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 3.6e-14 82.4 66 57.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.4e-10 69.7 116 33.6
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 4.6e-09 65.5 141 34.8
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.3e-08 63.9 132 33.3
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 1.2e-06 57.4 59 55.9


User provided reference genes

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