Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 0.0e+00 1104.7 559 100.0
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.0e-282 975.3 566 88.5
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.3e-273 946.0 531 91.0
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.7e-260 901.7 563 83.8
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 2.4e-211 739.2 559 69.2
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 2.9e-209 732.3 569 67.0
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 4.2e-208 728.4 552 69.0
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.5e-205 719.9 563 66.4
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 4.3e-205 718.4 569 64.9
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 5.6e-205 718.0 523 70.0
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 6.9e-203 711.1 571 65.5
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-201 706.8 534 67.6
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 3.8e-201 705.3 566 66.1
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 4.9e-201 704.9 533 68.3
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.4e-200 702.6 527 70.8
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.2e-199 700.3 568 65.0
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.6e-196 689.9 562 65.1
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 6.2e-196 688.0 572 63.8
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.1e-195 687.2 528 66.9
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.1e-195 687.2 555 64.7
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.7e-193 679.9 571 64.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.9e-193 679.1 563 64.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.4e-192 676.8 571 64.1
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 4.2e-192 675.2 568 63.7
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 7.1e-192 674.5 538 65.1
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 7.1e-192 674.5 530 65.1
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.0e-190 669.1 534 64.8
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.9e-189 666.4 539 66.6
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.9e-189 666.4 539 66.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 2.1e-188 662.9 564 61.5
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 8.2e-188 661.0 559 62.8
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 8.2e-188 661.0 524 63.5
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.1e-187 659.1 555 62.0
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.0e-187 658.7 575 62.8
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.5e-186 656.8 525 64.8
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.6e-186 656.0 564 61.2
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 4.9e-185 651.7 555 62.0
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 6.5e-185 651.4 530 64.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.9e-184 649.8 556 61.5
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.1e-183 646.4 531 64.0
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 4.6e-183 645.2 563 62.0
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 2.3e-182 642.9 555 60.7
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 3.0e-182 642.5 555 61.3
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 6.7e-182 641.3 524 64.9
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 8.7e-182 641.0 568 61.3
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.1e-181 640.6 530 64.0
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.5e-181 639.4 534 64.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 3.3e-181 639.0 536 63.1
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.3e-180 637.1 550 60.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.8e-180 635.2 521 64.1
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 9.0e-179 630.9 522 64.6
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.5e-178 630.2 522 64.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 3.4e-178 629.0 533 61.5
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 3.4e-178 629.0 536 61.6
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 5.9e-178 628.2 551 62.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 5.9e-178 628.2 611 56.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 7.7e-178 627.9 550 62.2
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 2.9e-177 625.9 551 62.3
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.8e-177 625.5 549 61.4
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 8.5e-177 624.4 585 58.3
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 8.5e-177 624.4 495 66.5
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 5.5e-176 621.7 445 72.8
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 5.5e-176 621.7 568 60.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 5.5e-176 621.7 568 60.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.6e-175 620.2 559 59.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.8e-174 616.7 556 58.1
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 6.7e-174 614.8 527 63.0
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 4.3e-173 612.1 531 61.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.7e-172 609.0 536 60.8
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.2e-170 604.0 535 60.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.5e-170 603.6 540 60.6
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.5e-170 602.1 564 58.3
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.5e-169 598.2 565 58.4
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 3.2e-168 595.9 497 63.6
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 6.7e-166 588.2 531 60.3
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 3.3e-165 585.9 523 59.7
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.8e-163 580.1 543 59.5
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.3e-161 573.9 573 56.2
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.7e-161 573.5 457 64.3
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 5.5e-152 542.0 548 55.8
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.0e-151 538.1 524 55.9
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 4.8e-148 528.9 357 74.8
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.4e-147 526.6 386 68.7
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.0e-147 525.0 386 68.4
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-143 514.2 386 67.1
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.4e-139 500.0 527 52.2
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 7.7e-138 495.0 551 51.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 2.3e-137 493.4 396 64.9
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 9.5e-136 488.0 348 70.1
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 3.6e-135 486.1 520 53.7
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 8.9e-134 481.5 562 47.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 8.6e-129 464.9 402 61.7
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.0e-126 458.0 606 45.7
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.4e-123 447.6 361 62.3
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 9.2e-123 444.9 552 46.2
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 7.3e-120 435.3 406 56.7
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 7.0e-115 418.7 328 66.5
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.8e-109 399.1 282 75.5
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 9.2e-107 391.7 311 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 7.3e-96 355.5 339 55.5
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.6e-93 347.1 317 56.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 5.4e-91 339.3 599 39.6
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.2e-90 338.2 328 53.0
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 2.5e-88 330.5 542 39.7
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 4.0e-86 323.2 590 37.5
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.9e-83 314.3 489 40.5
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 6.1e-66 256.1 551 33.9
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 7.4e-64 249.2 192 65.6
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 6.3e-63 246.1 219 59.4
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.6e-58 229.9 152 76.3
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 2.6e-48 197.6 144 66.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 9.7e-48 195.7 161 64.0
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 4.1e-46 190.3 171 60.2
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.7e-44 184.9 166 61.4
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.7e-42 177.6 473 31.5
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 7.4e-40 169.5 170 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.3e-28 132.1 156 48.1
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-22 111.3 87 60.9
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 6.6e-20 103.2 98 55.1
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.9e-15 87.8 98 48.0
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 1.8e-14 85.1 55 74.5
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 4.6e-13 80.5 54 64.8
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 4.6e-13 80.5 81 60.5
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.7e-10 70.5 51 58.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.8e-09 68.6 76 46.1


User provided reference genes

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