Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G045340 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.1e-88 330.1 184 100.0
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.1e-88 330.1 184 100.0
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 5.4e-88 327.8 184 92.9
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 7.8e-87 323.9 184 91.8
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 1.3e-86 323.2 184 94.0
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 3.4e-82 308.5 184 87.0
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.2e-75 284.6 184 80.4
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 5.2e-75 284.6 184 80.4
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 5.2e-75 284.6 184 82.1
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 1.5e-74 283.1 184 87.0
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.6e-74 282.3 184 81.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 5.8e-74 281.2 184 81.5
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 1.3e-73 280.0 184 77.7
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 1.7e-73 279.6 183 85.8
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 2.9e-73 278.9 183 77.6
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 2.9e-73 278.9 184 81.0
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 3.7e-73 278.5 184 85.3
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 8.3e-73 277.3 184 77.2
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 1.1e-72 276.9 183 84.2
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 2.4e-72 275.8 184 81.0
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 5.4e-72 274.6 184 76.6
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 7.1e-72 274.2 184 79.3
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 9.2e-72 273.9 184 84.2
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 9.2e-72 273.9 184 84.2
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 2.7e-71 272.3 184 77.2
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.0e-70 270.4 184 77.2
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.1e-69 266.9 184 78.3
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.1e-69 266.9 184 81.5
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.5e-69 266.5 184 76.1
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 1.5e-69 266.5 183 83.6
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 3.3e-69 265.4 184 81.5
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 7.3e-69 264.2 184 82.6
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 7.3e-69 264.2 184 78.8
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 2.8e-68 262.3 184 73.4
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 8.1e-68 260.8 184 75.0
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 8.1e-68 260.8 178 80.3
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 5.2e-67 258.1 184 77.2
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 5.2e-67 258.1 184 71.2
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 6.8e-67 257.7 184 74.5
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 6.8e-67 257.7 185 79.5
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 8.9e-67 257.3 184 72.3
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 8.9e-67 257.3 184 83.2
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 8.9e-67 257.3 184 83.2
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.5e-66 256.5 184 79.3
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 2.0e-66 256.1 184 78.8
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 2.0e-66 256.1 184 79.9
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 2.0e-66 256.1 190 78.9
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 2.0e-66 256.1 184 78.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.6e-66 255.8 184 73.4
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 2.6e-66 255.8 184 80.4
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 4.4e-66 255.0 183 72.1
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 5.8e-66 254.6 184 81.0
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 5.8e-66 254.6 184 81.0
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 7.6e-66 254.2 184 75.0
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 7.6e-66 254.2 184 71.7
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 7.6e-66 254.2 184 70.7
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-65 253.4 184 76.6
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 6.4e-65 251.1 182 71.4
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.1e-64 250.4 184 78.8
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 2.4e-64 249.2 184 75.5
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 2.4e-64 249.2 184 73.9
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 3.2e-64 248.8 184 78.3
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 5.4e-64 248.1 184 77.7
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 7.1e-64 247.7 184 77.7
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 7.1e-64 247.7 183 78.1
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 9.3e-64 247.3 184 78.8
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.2e-63 246.9 184 77.7
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 2.1e-63 246.1 184 71.7
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 3.5e-63 245.4 192 74.5
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 4.6e-63 245.0 184 76.6
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-62 243.4 184 69.6
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 1.3e-62 243.4 184 69.6
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 1.7e-62 243.0 184 75.0
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.3e-62 242.7 184 74.5
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 3.9e-62 241.9 185 75.7
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 5.1e-62 241.5 184 76.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.1e-62 241.5 184 76.6
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 6.6e-62 241.1 184 70.1
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-61 240.4 187 75.4
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 1.1e-61 240.4 183 71.6
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.1e-61 240.4 184 68.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-61 240.0 184 76.1
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.9e-61 239.6 191 73.3
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.9e-61 239.6 191 73.3
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 1.9e-61 239.6 186 75.8
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.9e-61 239.6 184 69.6
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 2.5e-61 239.2 184 74.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-61 239.2 184 76.1
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 3.3e-61 238.8 185 76.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.3e-61 238.4 184 76.1
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 5.6e-61 238.0 198 69.7
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 9.6e-61 237.3 183 70.5
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 2.8e-60 235.7 183 69.9
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 2.8e-60 235.7 183 69.9
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 1.4e-59 233.4 195 65.1
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 4.0e-59 231.9 182 65.9
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 4.0e-59 231.9 188 71.8
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 4.0e-59 231.9 185 75.1
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 4.0e-59 231.9 186 73.7
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 4.0e-59 231.9 184 64.1
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.2e-58 230.3 183 66.7
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.5e-58 229.9 188 71.3
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.5e-58 229.9 188 71.3
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 1.5e-58 229.9 194 73.2
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 2.0e-58 229.6 184 72.3
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 2.6e-58 229.2 184 65.8
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 2.6e-58 229.2 184 65.8
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 2.6e-58 229.2 184 71.7
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 3.4e-58 228.8 184 72.3
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 9.9e-58 227.3 185 71.4
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 9.9e-58 227.3 190 73.2
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 2.2e-57 226.1 183 73.8
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 3.2e-56 222.2 184 65.8
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 6.0e-55 218.0 189 70.9
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 6.6e-54 214.5 184 69.0
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 1.1e-53 213.8 188 68.1
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.3e-52 210.3 187 70.6
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 2.1e-52 209.5 164 74.4
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 2.8e-52 209.1 184 70.1
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 3.6e-52 208.8 183 59.6
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 5.3e-51 204.9 185 68.6
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 6.9e-51 204.5 186 58.6
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 4.5e-50 201.8 185 68.6
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 8.4e-49 197.6 183 59.0
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 2.4e-48 196.1 181 57.5
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 1.9e-45 186.4 187 61.0
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.3e-44 183.7 173 60.1
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 4.0e-43 178.7 184 55.4
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 6.5e-41 171.4 182 53.3
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.1e-40 170.6 126 69.8
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 4.6e-39 165.2 183 61.2
arahy.Tifrunner.gnm1.ann1.9D2XZ1 Arachis hypogaea HOM05D001473 ORTHO05D003934 6.9e-35 151.4 138 69.6
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 6.9e-35 151.4 186 50.5
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 3.4e-34 149.1 185 50.3
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 4.5e-34 148.7 186 50.5
Sc03g0006690 Simmondsia chinensis HOM05D001473 ORTHO05D003934 4.5e-34 148.7 106 70.8
GSVIVG01023526001 Vitis vinifera HOM05D001473 ORTHO05D003934 1.0e-25 120.9 82 79.3
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.7e-25 120.2 173 48.6
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 4.2e-24 115.5 183 39.9
arahy.Tifrunner.gnm1.ann1.0270XD Arachis hypogaea HOM05D001473 ORTHO05D003934 4.6e-23 112.1 82 73.2
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 8.8e-22 107.8 103 56.3
HPP92_023312 Vanilla planifolia HOM05D001473 ORTHO05D003934 1.5e-21 107.1 82 65.9
Migut.B01119 Erythranthe guttata HOM05D001473 ORTHO05D003934 5.3e-19 98.6 146 43.8
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 1.5e-18 97.1 163 44.2
arahy.Tifrunner.gnm1.ann1.E23V63 Arachis hypogaea HOM05D001473 ORTHO05D003934 2.0e-13 80.1 82 56.1
SMO196G0113 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.4e-11 73.9 158 38.0
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 5.3e-11 72.0 97 50.5
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 1.2e-10 70.9 87 44.8
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 3.2e-08 62.8 181 32.6
SMO234G0003 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 3.2e-08 62.8 87 48.3
Psat5g036600 Pisum sativum HOM05D000945 ORTHO05D000919 2.1e-07 60.1 42 66.7
CSS0024952 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D110614 1.8e-06 57.0 63 54.0


User provided reference genes

Program Settings