Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 0.0e+00 1156.0 595 100.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 0.0e+00 1133.6 595 97.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 0.0e+00 1130.2 595 97.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1091.6 595 93.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1079.7 596 92.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 5.8e-285 983.8 593 84.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.0e-281 973.0 591 83.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 4.3e-280 967.6 617 80.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.8e-278 962.2 593 82.3
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 6.9e-278 960.3 594 81.3
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.2e-277 959.5 595 81.7
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.5e-277 959.1 591 80.9
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.5e-277 959.1 592 82.4
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 8.5e-276 953.4 592 80.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 8.5e-276 953.4 595 80.5
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 5.5e-275 950.7 609 79.6
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.2e-275 950.3 591 81.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.6e-274 948.0 601 80.4
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 4.6e-274 947.6 596 80.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.9e-273 944.5 592 80.4
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.7e-271 939.1 594 79.6
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.3e-271 937.2 591 80.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-269 932.9 595 79.8
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.7e-268 929.1 567 82.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.7e-268 929.1 593 79.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.2e-268 928.7 593 79.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.8e-268 927.9 595 79.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.8e-268 927.9 594 78.3
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.8e-268 927.9 596 78.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.5e-268 926.8 594 78.8
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.5e-267 925.2 595 78.7
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.2e-267 924.9 593 78.9
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.4e-267 923.3 595 78.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-266 922.9 591 79.0
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.2e-266 922.9 595 79.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.7e-266 921.8 594 79.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.9e-265 917.9 593 78.6
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 6.7e-265 917.1 591 78.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 6.7e-265 917.1 640 74.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.3e-264 914.8 592 78.7
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.2e-263 912.1 592 78.5
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.7e-263 911.4 606 77.2
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 8.2e-263 910.2 593 78.4
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.1e-262 908.3 614 76.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.1e-262 908.3 599 77.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.1e-262 906.7 592 77.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 9.1e-262 906.7 599 76.8
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 4.5e-261 904.4 596 77.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 4.5e-261 904.4 596 77.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.0e-260 903.3 599 76.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.0e-260 903.3 596 76.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.3e-260 902.9 599 76.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.0e-260 901.0 598 76.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.0e-260 901.0 597 76.9
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.1e-259 899.8 596 77.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.5e-259 898.7 594 76.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.5e-259 898.7 593 76.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.2e-259 897.9 598 76.1
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.2e-259 897.1 596 75.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.7e-258 895.2 598 75.8
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.7e-258 895.2 599 75.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.6e-258 894.8 600 76.8
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 8.0e-258 893.6 594 76.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-257 892.9 596 75.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.4e-257 892.9 599 75.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.3e-257 892.1 594 75.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.0e-257 891.7 596 76.7
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 3.9e-257 891.3 598 75.4
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-257 891.0 596 75.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.2e-257 891.0 596 75.0
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 5.2e-257 891.0 590 75.9
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.2e-257 891.0 596 75.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.2e-257 891.0 595 76.5
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.7e-257 890.6 596 75.0
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.7e-257 890.6 594 75.8
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 8.8e-257 890.2 594 75.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.8e-257 890.2 594 75.6
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.1e-256 889.8 651 71.4
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-256 889.4 596 74.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.5e-256 889.4 595 76.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.0e-256 889.0 614 74.3
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 4.4e-256 887.9 596 74.5
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.4e-256 887.9 589 77.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.7e-255 884.8 595 76.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.1e-254 883.2 595 75.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.4e-254 882.9 675 69.2
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.3e-254 880.9 591 77.3
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-253 879.8 596 74.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 7.7e-253 877.1 592 74.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.9e-252 875.2 595 74.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.9e-252 875.2 594 74.6
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.1e-251 873.2 589 74.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.4e-248 861.3 564 79.3
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.8e-247 858.6 548 79.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 7.0e-246 854.0 616 71.8
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.2e-245 853.2 593 72.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-244 849.7 564 76.8
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.2e-244 849.0 551 78.0
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-243 845.5 593 72.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-243 845.5 593 72.8
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.2e-242 843.2 597 74.7
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.4e-241 839.7 556 76.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 3.5e-237 825.1 550 76.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-235 819.3 585 73.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.0e-233 812.0 585 72.6
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.0e-232 809.3 612 69.3
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.5e-227 793.1 635 66.0
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.4e-224 781.6 648 63.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 7.5e-224 780.8 593 68.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.9e-220 768.5 502 77.9
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-219 766.9 469 82.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.0e-217 758.4 598 65.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-216 756.1 596 66.3
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 8.3e-215 750.7 595 64.7
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.9e-214 749.6 496 76.6
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-210 736.9 471 78.8
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.8e-194 681.8 544 67.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.0e-188 662.5 423 79.2
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.5e-184 648.7 503 68.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 8.7e-180 634.4 440 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.8e-175 619.0 597 54.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 8.7e-172 607.8 598 53.5
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.4e-168 595.9 570 53.7
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.6e-157 558.9 438 65.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-146 522.7 366 74.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 9.1e-145 518.1 605 46.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.6e-144 517.3 313 83.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.1e-133 480.3 576 45.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.7e-133 479.2 418 60.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.8e-127 459.5 521 52.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-124 450.3 334 69.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.6e-123 446.8 281 80.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.5e-115 418.7 242 83.1
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.2e-106 390.6 280 73.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-102 377.9 436 49.8
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.4e-91 339.7 316 59.8
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.6e-87 325.5 278 62.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.6e-77 293.5 657 32.0
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 4.2e-73 280.0 547 34.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.6e-72 278.1 178 77.5
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-61 240.7 140 85.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.8e-60 238.0 145 82.8
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 5.3e-60 236.5 149 77.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.5e-46 191.0 149 69.1
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.4e-44 185.3 120 79.2
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 4.6e-40 170.2 615 28.3
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.2e-33 146.4 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-30 139.0 120 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.7e-29 134.0 186 40.3
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.1e-28 132.5 97 68.0
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.0e-26 123.6 70 80.0
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-25 122.5 97 60.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.0e-22 111.7 66 78.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 6.3e-21 106.7 69 63.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.9e-18 97.8 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.6e-16 92.0 630 22.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 2.7e-16 91.3 49 87.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.4e-15 89.0 48 87.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.8e-15 86.3 94 51.1
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 7.5e-14 83.2 71 53.5
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.1e-12 79.3 286 27.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.2e-09 66.6 46 69.6
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.2e-09 66.6 46 69.6
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.6e-08 64.3 53 64.2
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 5.7e-06 57.0 46 60.9


User provided reference genes

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