Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 7.7e-178 627.1 330 100.0
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 9.8e-165 583.6 331 94.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.5e-162 574.7 332 92.5
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.3e-140 503.4 332 82.2
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.4e-139 499.2 330 81.2
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.5e-136 490.0 334 78.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.6e-136 488.0 334 78.1
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 5.6e-136 488.0 323 81.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.6e-135 486.5 316 81.3
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-135 486.5 334 77.2
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.8e-135 485.7 306 83.3
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.6e-135 485.3 311 81.7
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 2.3e-134 482.6 313 80.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 6.8e-134 481.1 336 77.7
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.0e-133 479.6 325 77.2
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.0e-133 479.6 335 76.7
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.4e-133 478.8 314 79.9
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 4.4e-133 478.4 333 77.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.4e-132 474.6 337 76.6
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.9e-131 473.0 331 76.7
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 7.1e-131 471.1 341 73.9
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.6e-130 469.9 327 75.5
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 3.5e-130 468.8 324 76.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.3e-129 466.8 292 80.8
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.7e-129 466.5 319 77.4
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.9e-129 465.3 323 76.5
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.5e-128 462.6 317 77.0
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.3e-128 462.2 317 77.0
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.3e-128 462.2 317 77.0
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.3e-128 461.8 331 75.5
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.6e-128 461.5 317 77.0
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 9.5e-128 460.7 325 75.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.6e-127 459.9 317 76.7
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 2.1e-127 459.5 333 74.2
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.1e-127 457.6 332 74.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.4e-126 456.8 331 74.3
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.8e-126 456.4 334 73.7
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.2e-125 453.8 326 74.8
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.6e-125 452.6 329 73.3
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 7.6e-125 451.1 327 73.4
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 7.6e-125 451.1 333 73.6
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 9.9e-125 450.7 316 74.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 9.9e-125 450.7 329 72.6
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.3e-124 450.3 330 73.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 4.9e-124 448.4 322 72.7
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.4e-124 448.0 308 75.3
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 8.4e-124 447.6 329 73.6
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.4e-124 447.6 332 72.6
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 3.2e-123 445.7 330 73.9
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 4.2e-123 445.3 323 74.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 5.4e-123 444.9 326 71.8
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.1e-123 444.5 332 72.3
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.1e-123 444.5 326 71.8
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.2e-122 443.7 331 71.9
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.6e-122 443.4 334 72.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.6e-122 443.4 325 72.3
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 2.1e-122 443.0 331 71.9
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.7e-122 442.6 326 72.1
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 6.0e-122 441.4 322 71.1
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.9e-121 438.7 307 74.6
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.1e-120 437.2 314 74.2
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.5e-120 436.8 330 70.6
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.9e-120 436.4 334 69.5
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.5e-120 436.0 326 69.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 3.3e-120 435.6 360 66.9
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 4.3e-120 435.3 336 69.6
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.3e-119 433.7 312 74.0
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.6e-119 433.3 331 68.9
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.1e-119 433.0 335 71.0
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.8e-119 432.6 328 69.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.6e-119 432.2 342 69.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 5.3e-118 428.3 330 71.2
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.3e-118 428.3 330 68.8
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 5.8e-117 424.9 326 69.3
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.7e-116 423.3 314 72.6
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.2e-116 422.9 328 70.4
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 4.9e-116 421.8 394 62.7
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.4e-116 421.4 291 73.5
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.4e-115 420.2 340 70.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.2e-115 419.1 329 68.7
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 4.2e-115 418.7 326 68.7
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 5.4e-115 418.3 292 73.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 7.1e-115 417.9 291 71.5
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 7.1e-115 417.9 323 69.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.2e-114 417.2 319 68.0
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.0e-113 414.1 321 68.8
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.3e-113 412.9 289 71.3
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 8.7e-113 411.0 318 67.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 8.7e-113 411.0 311 71.1
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.5e-112 410.2 300 73.3
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.5e-112 410.2 321 68.5
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.5e-112 410.2 333 66.4
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 2.5e-112 409.5 343 66.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.3e-111 407.1 316 68.7
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.6e-111 406.8 319 67.7
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.8e-111 406.0 334 67.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.8e-111 405.2 376 62.5
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 6.2e-111 404.8 316 68.7
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 6.2e-111 404.8 316 68.7
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.4e-110 403.7 331 65.9
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-110 402.9 259 78.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 9.0e-110 401.0 315 69.5
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 9.0e-110 401.0 314 69.4
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-109 400.2 316 67.7
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.5e-109 400.2 316 67.7
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.5e-109 400.2 294 68.4
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.0e-109 399.8 320 66.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 7.6e-109 397.9 316 67.7
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-108 396.7 316 68.0
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 4.9e-108 395.2 316 67.4
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 6.4e-108 394.8 316 67.1
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 6.4e-108 394.8 316 67.4
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 8.4e-108 394.4 297 74.1
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.9e-107 393.3 304 66.4
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.1e-107 391.3 390 60.3
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 5.1e-105 385.2 316 66.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.1e-104 384.0 319 66.5
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.3e-104 382.5 292 67.1
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 5.6e-104 381.7 406 54.7
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-103 380.2 334 63.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.7e-103 379.0 313 64.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 4.8e-103 378.6 331 62.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.8e-103 378.6 313 64.2
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.8e-102 376.7 333 65.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 3.1e-102 375.9 350 62.0
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 6.9e-94 348.2 330 57.6
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 5.0e-92 342.0 346 59.2
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.9e-91 340.1 339 59.3
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.0e-85 320.1 312 57.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.2e-84 316.6 293 59.0
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.2e-82 310.8 316 57.9
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.2e-82 310.8 324 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.6e-82 308.9 316 54.7
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.9e-81 305.8 313 57.2
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-80 304.3 312 58.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 9.4e-75 284.6 251 59.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.3e-72 276.2 317 51.7
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.0e-68 264.6 327 49.8
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.2e-68 263.5 181 76.2
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-67 260.8 325 51.1
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 9.4e-67 258.1 269 56.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-65 252.3 219 67.1
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 8.8e-65 251.5 167 74.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 5.3e-62 242.3 254 57.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-57 227.6 234 59.0
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 7.0e-54 215.3 158 68.4
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.2e-51 206.1 137 80.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.6e-50 203.0 190 64.7
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-49 200.7 174 66.7
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.6e-44 182.2 184 62.0
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 2.5e-43 180.3 310 40.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-37 161.4 118 78.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 5.0e-36 156.0 160 60.6
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-32 144.8 136 62.5
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 3.2e-30 136.7 302 35.1
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 5.6e-27 125.9 351 32.8
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-24 117.5 81 66.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.9e-22 110.9 101 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.2e-22 110.2 79 65.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 4.3e-19 99.8 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.8e-17 94.4 89 53.9
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 3.4e-16 90.1 61 77.0
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.6e-11 72.0 107 50.5
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.0e-09 66.6 43 72.1
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-08 65.1 38 86.8
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 1.5e-08 64.7 93 51.6
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.5e-08 64.7 65 53.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 2.0e-08 64.3 52 61.5
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.7e-07 61.2 68 52.9


User provided reference genes

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